Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00627 ATGAATTCAATAACCCTTTTAGGTCCAAAGGTGGTCCACAAATTTTCCCATTCTTTGATTATTTTGCGGAGTTTATGTAGCCTTCCGTTTGGTGGTGATGGATTTGAATGCATTGAGGAGCCTTTGAAAAACCTAGAATTAAATTGTGATTCTGCTGTGGATGGAACGCTCCGTTTAAACGAGGATTGGGGCTATAACCAAAAGCAGTTTTCACTGAGGAAAGGGTTCATAGAAAGTGTGAGGTTAGATGCTAAGAGGGTTCTTGAGGTTCTCCGACAAGATGGTCCCGGTCTCGATGCCAGGTTGGTTTTAGGTGAGTTGCATGTGAGGCCATCAGGGCTTCTTGTGAGGGAGGTTCTCTTTGGAATTTTGAAGAACATAAATTCTGAGAATAAAACTAGGTGTGCAAAGCTGGCATACAAGTTTTTTGTGTGGTGTAGTCAGCAAGAGGGTTACCGGCATACTGCAAATGCATATCACTTAGTTATGAACATATATGCGGAGTGTGAGGAGTTTAAGGCATTGTGGAGATTGGTTGATGAAATGATTGAGAAAAAGCTTCCGGCTACTGCTCGAACTTTCAATATCTTGATTCGTACTTGTGGTGAGGCAGGATTGGCTAAGAAATTGGTGGAGAGGTTCTTAAAATCAAAGACATTTAACTTTAGGCCTTTTAAGCACTGCTATAACGCAATCCTGCATGGTCTTCTTGTTTTAAAACAGTACAAGTTGATTGAGTGGGTTTATCAGCAGATGTTGCTTGATGGATTTTCTTCAGATATTTTAACTTATAATATTGTCATGTATGCAAAGTACAGACTTGGAAAGTTGGATCAATTCCACAGACTGTTTGACGAGATGGGTAGAAATGGATTTTTTCCAGATTTTCATACATTCAATATTCTACTTCATGTTCTTGGCAAAGGGGACAAACCGCTTGCAGCTCTCAATCTCTTAAATCACATGAGAGAAATGGGTATAGATCCAACTGTGCTTCATTTCACTACATTGATAGATGGACTTAGCAGAGCTGGAAATATGGATGCTTGCAAGTATTTTTTTGATGAAATGATAAAGAATGGATGTATCCCAGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCTGGTGAGCTTGAGAATGCCCTGGAAATGTATCAAGATATGATTTCTAGAGAACAAATTCCAAATGTTTTTACATACAATTCCATAATTCGGGGATTGTGCAGGGCAGGAAAATTTGATGAAGCATGTTCAATGCTCAAGGAAATGGAAACCAAAGGTTGTAGTCCAAACTCTGTTGTCTATGATAGTTTAGTGAGTTGTTTACGGAATGCTGGAAAGACTGCTGCTGCTCATGAAGTGATAAGACAGATGACAGAGAAGAGCAAGTACACTCACATATATTCAAGATACGAACGGAACAAATGA 1440 0.3937 MNSITLLGPKVVHKFSHSLIILRSLCSLPFGGDGFECIEEPLKNLELNCDSAVDGTLRLNEDWGYNQKQFSLRKGFIESVRLDAKRVLEVLRQDGPGLDARLVLGELHVRPSGLLVREVLFGILKNINSENKTRCAKLAYKFFVWCSQQEGYRHTANAYHLVMNIYAECEEFKALWRLVDEMIEKKLPATARTFNILIRTCGEAGLAKKLVERFLKSKTFNFRPFKHCYNAILHGLLVLKQYKLIEWVYQQMLLDGFSSDILTYNIVMYAKYRLGKLDQFHRLFDEMGRNGFFPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIDPTVLHFTTLIDGLSRAGNMDACKYFFDEMIKNGCIPDVVAYTVMITGYVVAGELENALEMYQDMISREQIPNVFTYNSIIRGLCRAGKFDEACSMLKEMETKGCSPNSVVYDSLVSCLRNAGKTAAAHEVIRQMTEKSKYTHIYSRYERNK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00627 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vian3g00627 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Vian3g00627 479 NCBIfam pentatricopeptide repeat 402 436 IPR002885 -
Vian3g00627 479 NCBIfam pentatricopeptide repeat 367 400 IPR002885 -
Vian3g00627 479 NCBIfam pentatricopeptide repeat 263 295 IPR002885 -
Vian3g00627 479 NCBIfam pentatricopeptide repeat 334 366 IPR002885 -
Vian3g00627 479 NCBIfam pentatricopeptide repeat 297 330 IPR002885 -
Vian3g00627 479 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 290 467 - -
Vian3g00627 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vian3g00627 479 Gene3D Tetratricopeptide repeat domain 353 479 IPR011990 GO:0005515
Vian3g00627 479 Gene3D Tetratricopeptide repeat domain 241 352 IPR011990 GO:0005515
Vian3g00627 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Vian3g00627 479 Pfam PPR repeat family 260 306 IPR002885 -
Vian3g00627 479 Pfam PPR repeat family 364 413 IPR002885 -
Vian3g00627 479 Pfam PPR repeat 325 357 IPR002885 -
Vian3g00627 479 Pfam Pentatricopeptide repeat domain 423 465 IPR002885 -
Vian3g00627 479 Gene3D Tetratricopeptide repeat domain 115 240 IPR011990 GO:0005515
Vian3g00627 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00627 181 475 Miscellaneous Gene Families AT4G11690 27.703 4.42e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00627 - - ccaj:109794849 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00627 3 6323449 6324888 Vian3g00627 3 6323449 6324888 ECH