Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00619 ATGGGAAAGCAAAAGCAACAAGTGATTTCCCGCTTCTTTGCTCGCAAAGCCAAACCTTCCTCTCCTCCGTCTCCCTCGTCTCCTTCTCCTCCTTCTTCTCTCCGTTCCAACCATCCCACTCCCAAAATCTCCGCCACCGCCACATTCTCCCCTTCCAAACGCCGCCTTAAGTCCCAACTCACACCCCCCCGCAAGCTCCAGAAGCTTCAGGAGCCTTCTTCCCCTTTACTTCACCAACGCTTCCTCCAGAAGTTTCTCGAACCTTCCTCCCCTGAACATCCCCCTCCCCCTTCCTCTTCCAAATGCCCAACCTACACTCCTCTCGAACAGCAGGTCCTCCACCTCAGAGCCAAACACCCCGACGTTCTCCTCATGGTCGAGGTCGGTTACAGATACCGTTTCTTCGGCCAAGACGCCGAAAACGCTGCCAGAGTCTTAGGCATTTACGCCCACATGGATCACAATTTCTTAACCGCTAGCATACCAACTTTTCGATTGAATGTCCACGTCAGGAGGCTCGTCAGTGCTGGGTATAAGGTCGGCGTGGTGCGGCAGACCGAGACCGCTGCCATCAAGGCCCACGGTTCCAACCGCTCTGCGCCGTTCGGGCGCGGGCTCTCGGCGCTTTACACGAAGGCTACGCTTGAGGCGGCGCCGGAGATCGGGGGAGGGGAGGATGAGTGTGCTGGAGAGAGTAATTACTTGCTTTGTGTGGTGGAGAAAAGTGTTGGGGGGGAGAAGGGGAATTGTGGGGTGGAGGGTGGTGCTGATGTGAGGATTGCGATTGTTGCTGTGGAGATTTCGACCGGGGATGTTATTTATGGGGAGTTTTGTGATGGTTTTCTGAGGAATGCGCTTGAGGCTGTTGTTGTGAACTTGTCTCCGGCTGAGTTGCTTCTCGGGGACCCTCTTTCAAAGCAAACAGAAAAGTTATTGCTGGATTTTGCTGGACCTGCCTCAAATGTTCGTGCGGAGCATGTTTCACGAGATTGCTTCATTGATGGGGGTGCTCTTTCTGAAGTTATGACCTTGTATGATAACATGAATGTAGACGGTCAACCAGATTCACTACAAAACAAGAATTTGAGGGAGCACAGAAGTCAGCAGTTAGTAATCAAGGAGGTGATGAACATGCCAGATTTGTCTGTCCAAGCTTTGGCCTTAACCATTCGGCATTTAAAGGAATTTGGTTTTGAAAAAATTTTGTGTTCAGGAGTTTCTTTAAGGCCCTTCTCAAACAATACGGAAATGACCCTTTCAGCCAATACACTTCAACAACTGGAGGTTTTGAAAAATAACAACGATGGATCTGAGATTGGTTCCTTGCTGCAAATTATGAATCACACTCTTACTGTATTTGGTTCTAGACTTCTTCGGCAATGGGTATCTCACCCATTATGTGACCGAACCTTAATCTCTGCACGTCTTCATGCTGTATCCGAAATTGCAGAGTGCATGGGATCTTGTAATGGCACAAACAATCTTGGAAAATTTGAAGACAATCCGGATGTAGTAATCATGCAACCTGAGTTAGCAAACATTCTTTCATTGGTTTTGACAACTCTTGGCCGAGCACCTGATATACAACGTGGAATTACGAGAATTTTCCATTGCACTGCTTCCCCATCTGAGTTTGTTGCAGTAATTCAAGCTATTTTCTCAGCTGGAAAACAGCTACAACAACTTAACATAGGAGAGGGGAATAATAACACATTGCGCTCCAATCTGTTAAAAAGGTTAATTTTGACTGCTTCCTCTGACAGTGTTATTGCTAATGCTGCAAAAATGTTGTCATCTTTGAACATAGAGTCAGCTGATCAAGGAGATCTAACAAAATTGATCACTGCTTCGGAGGGACAGTTCCCAGAGGTCATTAAAGCTCGTAAGGATTTCAAGCTGGCAGTGGAACAATTAGATTCACTGATTGACTTGTATCGCAAATTGCTTAAAATGCAAAAAATGGAATTTATTACTGTTTCTGGAACAACTCATTTGATTGAGTTATCAACAGATGTAAAGGTTCCTTCAAACTGGGTGAAGGTAAATAGCACGAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTAACAGCATTGGACAGGTTATCATTAGCAAAAGAGGAGCTCAGCATTGCTTGCCGAGCTGCTTGGAATAGCTTTCTCAGGGACTTCAGTAAATACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCAGCTTTAGATTGTCTGTACTCACTTGCCATTCTTTCAAGAAATAAGGGCTATGTTCGCCCTGTGTTTGTAGATAACCAAGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACCACCTTACAAGAGAATTTTGTCCCAAATGATACAAACTTGCATGCAGATGGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGTGGAAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTAGATCCATTGCGGTGTCTACTGTATTTCTGCTTTGATTTTCTGCCGTTAATGCAACAAGGTGCTGAGGTTGTGCAGTGCTTACGCTTTGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCACGTCCTGGATAGGATCTACACCCGAATGGGTGCTTCTGACAGTATTCAAGAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAAACTTCACATATACTCCACTGTTGCACAGAACATTCACTGGTTATCATTGATGAGCTTGGGAGAGGAACAAGTACACATGATGGTATGGCCATTGCTCACGCGACATTGCATTATCTTCTGAAGGAAAAACGAAGCATGGTCCTCTTTGTTACTCACTATCCAAAGATTGCCAGCTTGTCAACTGAATTTCCTGGCTCTGTGGCGGCATATCACGTATCACATCTTACCTCACATGATGCAAGTAAAAATTCCAACTTGGATGATGATATAACTTATCTGTACAAGCTCGCACCGGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTTGCCCAGCTTGCACAGTTGCCATCGCATTGCATCAGTCGAGCCCTTGTCATGGCTTCCAAATTAGAAGCACTAGAAGATAGTAGAATGCATAGTAGATCGGGAAAGGAGCTATTATTGGATACGCCGGTGATCGGTCAAGAGCAAGAGCAAGAACAGCTTATGCCTGAACCGCATCATTGTCGTTTTCAAGAGTTTGGTATAGCTTACAAAGATTTCTATCTAAACTTAAAAGCTGCAATACAAGATGATGACTGTGCAAAAAGCTGTCACCTGTTGAAACATGCCAGAAGCATTGCAAAGAAATTAATTGGCAGTTGA 3342 0.453 MGKQKQQVISRFFARKAKPSSPPSPSSPSPPSSLRSNHPTPKISATATFSPSKRRLKSQLTPPRKLQKLQEPSSPLLHQRFLQKFLEPSSPEHPPPPSSSKCPTYTPLEQQVLHLRAKHPDVLLMVEVGYRYRFFGQDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVRQTETAAIKAHGSNRSAPFGRGLSALYTKATLEAAPEIGGGEDECAGESNYLLCVVEKSVGGEKGNCGVEGGADVRIAIVAVEISTGDVIYGEFCDGFLRNALEAVVVNLSPAELLLGDPLSKQTEKLLLDFAGPASNVRAEHVSRDCFIDGGALSEVMTLYDNMNVDGQPDSLQNKNLREHRSQQLVIKEVMNMPDLSVQALALTIRHLKEFGFEKILCSGVSLRPFSNNTEMTLSANTLQQLEVLKNNNDGSEIGSLLQIMNHTLTVFGSRLLRQWVSHPLCDRTLISARLHAVSEIAECMGSCNGTNNLGKFEDNPDVVIMQPELANILSLVLTTLGRAPDIQRGITRIFHCTASPSEFVAVIQAIFSAGKQLQQLNIGEGNNNTLRSNLLKRLILTASSDSVIANAAKMLSSLNIESADQGDLTKLITASEGQFPEVIKARKDFKLAVEQLDSLIDLYRKLLKMQKMEFITVSGTTHLIELSTDVKVPSNWVKVNSTKKTIRYHPPEVVTALDRLSLAKEELSIACRAAWNSFLRDFSKYYAEFQAAVQALAALDCLYSLAILSRNKGYVRPVFVDNQEPVQIQICSGRHPVLETTLQENFVPNDTNLHADGEYCQIVTGPNMGGKSCYVRQVALIAIMAQVDPLRCLLYFCFDFLPLMQQGAEVVQCLRFVGSFVPASSAKLHVLDRIYTRMGASDSIQEGRSTFLEELSETSHILHCCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKEKRSMVLFVTHYPKIASLSTEFPGSVAAYHVSHLTSHDASKNSNLDDDITYLYKLAPGVSERSFGFKVAQLAQLPSHCISRALVMASKLEALEDSRMHSRSGKELLLDTPVIGQEQEQEQLMPEPHHCRFQEFGIAYKDFYLNLKAAIQDDDCAKSCHLLKHARSIAKKLIGS 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00619 1113 Gene3D MutS, connector domain 229 416 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vian3g00619 1113 Pfam MutS domain V 852 1030 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vian3g00619 1113 Pfam MutS domain V 803 829 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vian3g00619 1113 FunFam DNA mismatch repair protein 96 226 - -
Vian3g00619 1113 Pfam MutS domain II 233 318 IPR007860 GO:0005524|GO:0006298|GO:0030983
Vian3g00619 1113 SUPERFAMILY DNA repair protein MutS, domain II 230 432 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vian3g00619 1113 SUPERFAMILY DNA repair protein MutS, domain III 421 753 IPR036187 -
Vian3g00619 1113 MobiDBLite consensus disorder prediction 21 35 - -
Vian3g00619 1113 Gene3D - 419 748 - -
Vian3g00619 1113 SMART DNAend 437 783 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vian3g00619 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 756 1030 IPR027417 -
Vian3g00619 1113 Gene3D DNA repair protein MutS, domain I 98 221 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vian3g00619 1113 Gene3D - 756 1062 IPR027417 -
Vian3g00619 1113 MobiDBLite consensus disorder prediction 36 73 - -
Vian3g00619 1113 PIRSF Msh6 94 1072 IPR017261 GO:0006298|GO:0030983
Vian3g00619 1113 MobiDBLite consensus disorder prediction 1 73 - -
Vian3g00619 1113 Pfam MutS domain I 106 216 IPR007695 GO:0005524|GO:0006298|GO:0030983
Vian3g00619 1113 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 110 829 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vian3g00619 1113 Pfam MutS domain III 422 748 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vian3g00619 1113 ProSitePatterns DNA mismatch repair proteins mutS family signature. 911 927 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vian3g00619 1113 SMART mutATP5 800 1027 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vian3g00619 1113 FunFam DNA mismatch repair protein 229 414 - -
Vian3g00619 1113 Gene3D - 598 724 - -
Vian3g00619 1113 FunFam DNA mismatch repair protein Msh3 598 724 - -
Vian3g00619 1113 SUPERFAMILY DNA repair protein MutS, domain I 100 214 IPR016151 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00619 Vian-Chr3 6251351 6259662 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00619 K08736 - gmx:100789883 1687.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00619 3 6251351 6259662 Vian3g00619 3 6251351 6259662 ECH