Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00603 ATGGCCGACGAAGACTATGATGACATGGACATGGGGTACGAGGATGAGCCACCAGAGCCTGAGATTGAGGAAGGTGCGGAGGAGGATTTGGAAAACAAAAATGACGAATTAACTGGAGATCCTATTGACACTGAGGATAAGGAAGAGGAACAAGTGGACCGCCCTCGAAAGACCTCGAAATATATGACTAAGTACGAGCGTGCTAGGATTTTGGGCACCCGAGCTCTTCAAATCAGTATGAATGCACCTGTCATGGTCGAATTGGAGGGGGAAACTGATCCACTTGAGATTGCTATGAAGGAACTCCGTGAGCGAAAAATACCCTTTACAATCCGGCGTTACTTGCCTGATGGAAGCTACGAGGATTGGGGAGTTGATGAACTGATCGTGGAAGACTCCTGGAAGAGGCAAGTAGGTGGTGATTAA 426 0.4789 MADEDYDDMDMGYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTEDKEEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00603 141 SMART RNA_pol_Rpb6_2 56 109 IPR006110 GO:0003677|GO:0003899|GO:0006351
Vian3g00603 141 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC2 2 132 - -
Vian3g00603 141 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 60 115 IPR006111 GO:0003677|GO:0003899|GO:0006351
Vian3g00603 141 SUPERFAMILY RPB6/omega subunit-like 3 131 IPR036161 GO:0003677|GO:0003899|GO:0006351
Vian3g00603 141 PIRSF RPB6 1 132 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Vian3g00603 141 MobiDBLite consensus disorder prediction 1 59 - -
Vian3g00603 141 Pfam RNA polymerase Rpb6 58 109 IPR006110 GO:0003677|GO:0003899|GO:0006351
Vian3g00603 141 PIRSF RpoK/RPB6 1 132 IPR006111 GO:0003677|GO:0003899|GO:0006351
Vian3g00603 141 MobiDBLite consensus disorder prediction 1 34 - -
Vian3g00603 141 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K 1 131 - -
Vian3g00603 141 Gene3D - 2 132 IPR036161 GO:0003677|GO:0003899|GO:0006351
Vian3g00603 141 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 63 77 IPR020708 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00603 Vian-Chr3 6085932 6087824 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00603 K03014 - gmx:100794926 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00603 3 6085932 6087824 Vian3g00603 3 6085932 6087824 ECH