Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00581 ATGGCTTTCTCTTCTAAACTTGACAGCTTCATCCTCTCTGCCTACAAATCGCAAAACTCCACTGCCCCACTTTCAAAAATCCAACCTTCCTCATTTCTCCCATGTCCTTCTTCCTTGAAGCCTCAAAAGCTTCCCTTCAGAATTCGCTACGATTCAACCATCCGAGCCACGTCAGCACCCTCATCCCCTTCCACAGCCATTGCCGAACCTGAAGGCATTAAGATTAATTCGATTCCAACCAAACCCTTTGAGGGACAAAAGACTGGTACCAGTGGGCTTCGGAAGAAGGTGAAAGTGTTTATGCAAGAAAATTACCTTGCAAATTGGATCCAGGCCCTGTTTAACTCATTGCCTCCAGAGGATTACAAGAATGGTTTGTTAGTGTTGGGAGGTGATGGTCGATACTTCAATCTGGAAGCTGCACAGATCATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAGATTCTGGTCGGAAAGGAAGGTATTTTGTCAACACCAGCTGTTTCTGCAGTAATAAGAAAGCACAAGGCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCCGGTGGACCTGAATATGATTGGGGTATTAAGTTTAATTACAGCAGTGGACAACCTGCACCGGAATCCATCACTGACAAGATTTATGGAAACACTTTGTCGATCTCTGAGATAAAGATAGCTGACGTTCCTGATGTTGACTTATCGAAAGTTGGGGTTACAAAGTTTGGAAGCTTCAGTGTGGAAGTAATAGACCCAGTCTCTGACTATCTGGAGCTACTGGAGACAGTATTTGATTTTCAGCTAATCAAAGGACTTCTTTCACGTCCAGATTTTAGGTTTATATTTGATGCCATGCATGCAGTTACTGGTGCTTATGCTAAACCCATCTTCGTTGATAAACTTGGTGCAAGTCTGGATTCAATTTTTAATGGAATTCCTTTGGAAGATTTTGGACACGGCCATCCTGATCCTAATCTAACATATGCAAAGGATCTTGTAAACATTCTGTACGCTGAAAATGGACCTGATTTTGGAGCTGCCAGTGATGGGGATGGTGATAGAAATATGATTCTAGGAAGAAGTTTTTTTGTAACTCCTTCAGACTCCGTAGCAGTTATTGCAGCCAATACAGAAGCAATTCCATACTTCAAGAATGGCGTGAAGGGTCTTGCTCGATCAATGCCCACAAATGGTGCTCTTGATCGTGTTGCTGAAAAACTGAACCTCCCTTTCTTCGAAGTCCCCACTGGTTGGAAATTTTTTGGAAATCTTATGGATGCTGGGAATTTGTCAGTTTGCGGGGAAGAGAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTCTTAGCTTGGCTTTCTATTATTGCACATCGTAACAAAGACAAGAAGCCGGGGGAGAAATTGATCTCCGTATCTGACGTCGTGAAGGAGCACTGGGCAACTTATGGAAGGAATTTCTTCTCAAGATATGACTACGAGGAATGTGAATCTGAAGGCGCCAATAAGATGATAGAATACCTACGAGATATTATATCCAAGAGCAAGGCTGGTGATAAGTATGGAAGTTATGTCCTCCAGTTTGCAGATGATTTTACATACACCGATCCTGTAGACGGAAGTGTGGTATCAAAACAAGGCGTTCGGTTTGTTTTTACAGATGGCTCAAGGATTATATATCGTTTATCAGGAACTGGTTCTGCAGGGGCAACTGTTAGAGTGTACATCGAACAGTTTGAACCAGATGTTTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGATTTGGCAATATCCGTGTCAAAGCTCAAAGACTTCACAGGGAGGGAGCAACCTACTGTGATCACATAA 1887 0.424 MAFSSKLDSFILSAYKSQNSTAPLSKIQPSSFLPCPSSLKPQKLPFRIRYDSTIRATSAPSSPSTAIAEPEGIKINSIPTKPFEGQKTGTSGLRKKVKVFMQENYLANWIQALFNSLPPEDYKNGLLVLGGDGRYFNLEAAQIIIKIAAGNGVGKILVGKEGILSTPAVSAVIRKHKANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADVPDVDLSKVGVTKFGSFSVEVIDPVSDYLELLETVFDFQLIKGLLSRPDFRFIFDAMHAVTGAYAKPIFVDKLGASLDSIFNGIPLEDFGHGHPDPNLTYAKDLVNILYAENGPDFGAASDGDGDRNMILGRSFFVTPSDSVAVIAANTEAIPYFKNGVKGLARSMPTNGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGNLSVCGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDKKPGEKLISVSDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRDIISKSKAGDKYGSYVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDVDAQIALKPLIDLAISVSKLKDFTGREQPTVIT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00581 628 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 86 225 IPR005844 GO:0005975|GO:0016868
Vian3g00581 628 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 258 361 IPR005845 GO:0005975
Vian3g00581 628 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 369 491 IPR005846 GO:0005975|GO:0016868
Vian3g00581 628 Gene3D - 263 365 - -
Vian3g00581 628 FunFam Phosphoglucomutase, cytoplasmic 1 366 463 - -
Vian3g00581 628 Gene3D - 74 262 - -
Vian3g00581 628 FunFam Phosphoglucomutase 5 474 628 - -
Vian3g00581 628 Gene3D - 474 628 - -
Vian3g00581 628 SUPERFAMILY Phosphoglucomutase, first 3 domains 353 498 IPR016055 GO:0005975|GO:0016868
Vian3g00581 628 SUPERFAMILY Phosphoglucomutase, first 3 domains 257 366 IPR016055 GO:0005975|GO:0016868
Vian3g00581 628 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 73 628 IPR045244 GO:0004614|GO:0005975
Vian3g00581 628 FunFam Phosphoglucomutase 5 263 365 - -
Vian3g00581 628 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 551 603 IPR005843 GO:0016868|GO:0071704
Vian3g00581 628 SUPERFAMILY Phosphoglucomutase, first 3 domains 75 287 IPR016055 GO:0005975|GO:0016868
Vian3g00581 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 280 299 IPR005841 GO:0005975|GO:0016868
Vian3g00581 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 345 360 IPR005841 GO:0005975|GO:0016868
Vian3g00581 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 316 329 IPR005841 GO:0005975|GO:0016868
Vian3g00581 628 PRINTS Phosphoglucomutase/phosphomannomutase family signature 180 194 IPR005841 GO:0005975|GO:0016868
Vian3g00581 628 CDD PGM1 78 628 - -
Vian3g00581 628 FunFam Phosphoglucomutase 5 74 262 - -
Vian3g00581 628 Gene3D - 366 463 - -
Vian3g00581 628 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 181 190 IPR016066 GO:0000287
Vian3g00581 628 SUPERFAMILY Phosphoglucomutase, C-terminal domain 493 628 IPR036900 GO:0016868|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00581 Vian-Chr3 5793191 5805372 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00581 K01835 - gmx:100802730 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00581 3 5793191 5805372 Vian3g00581 3 5793191 5805372 ECH