Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00566 ATGTTCAAACAGGTTCGTCTTCTTCTGCTCTTCTTGGCCTCTGGATTCACCCTCTCCGTTTCAGAGTCCCAATCTACTTCTCTTCTGCCTCATGCTGCTGACTCCTTCAATGTCAGCTATATCCAGCTGAAGAACGCGGCGACTTGTTCTTACTTGGTGGTTATATCTACTAGTTGTTCGTCTCCTAGTTATACAAGAGATCAGATCAGTATTGCTTTTGGGGATGCTTATGGAAATCAGATATATATACCAAGACTGGATGATCCAACTTCAGGTACATTCGAGAGTTGTAGTTCAGATACATTTCAAATAACTGGTCCGTGTGCATATCAGATATGTTATGTATACCTATATAGACACGGATCAGATGGTTGGAGGCCTGAAAGTGTGAAAATCAATAGTTATAATGGCAGGGCTGTTACTTTCTATTACAACACATATATCCCCGGTGATACTTGGTATGGATTTGATTTGTGCAGCGGTGCTTCTTCTTCGAACCAGGTATCCAAGCAGAAATGGCTTATATTTATGGTTCTAGGATTTGTTCTAAGTTTTTGGTCGTAA 564 0.4078 MFKQVRLLLLFLASGFTLSVSESQSTSLLPHAADSFNVSYIQLKNAATCSYLVVISTSCSSPSYTRDQISIAFGDAYGNQIYIPRLDDPTSGTFESCSSDTFQITGPCAYQICYVYLYRHGSDGWRPESVKINSYNGRAVTFYYNTYIPGDTWYGFDLCSGASSSNQVSKQKWLIFMVLGFVLSFWS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00566 187 Pfam Embryo-specific protein 3, (ATS3) 41 159 IPR010417 -
Vian3g00566 187 CDD PLAT 49 159 - -
Vian3g00566 187 PANTHER PLAT DOMAIN-CONTAINING PROTEIN 5 163 - -
Vian3g00566 187 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 48 156 IPR036392 GO:0005515
Vian3g00566 187 Gene3D PLAT/LH2 domain 45 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00566 Vian-Chr3 5659320 5660785 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00566 - - gmx:100499692 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00566 3 5659320 5660785 Vian3g00566 3 5659320 5660785 ECH