Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00433 ATGTTGCAAACCCTAGGAGGCGTAACCCCTCGCTTCGTGAATCGGTCATGGCTCCGAAACCTGACGGTGCGTGCAATGACATTCTCTTCCTCCTCCGATTATGGAGACCAGTCACGTGGTGGCCTTCCTCGCTTCTACTCCGAAATTCTTCCTCCTTCCAAGGGTAGTGTTATACGCGTGCAAGGTGATGAATTTTGGCATATGACAAAAGTACTGAGGTTAAGCACCAACGATAGGGTACAGCTGTTCAATGGAAAAGGAGGTCTTGTAGAAGGATGCATACAGGACATTGATCGCAGTGGGCTTGATTTTGTTGCATCGAGTGATTTGATATCAATACCTCCACAAAATACACAATTGCACGTGTTTGCTGGTTTTGGTACGCTAAAGGGTGGTCGTGCAGACTGGCTTGTAGAAAAGTGCACAGAACTTGGAGCCAGTAGTGTAACTCCTCTATTGACTGAACGTTCTCCATCGATATCAGAAAATCGGGTGGACAGATTGGAACGTGTCATTTTAGCAGCATCCAAACAATGTCAACGACTGCATGAAATGGTTCTGAAAGATCCTATAGAGATTAATGACCTTTTGCACCTTATTGCACAATCAAAGCTAGCTCTTGTTGCGACGGCGAAAGCAACTCCTGTTCTTAGTGCATTGACGTCATTGGAAAAGGAAACCAGTGGCTTAATAATTATTGGACCAGAAGGCGATTTCACCGAGAAAGAAACAAAAATGATGATGGAAGCAGGTGCTACAGCTGTTAGTCTTGGACCTCATCGTCTTCGAGTTGAAACTGCCACGATATCACTTTTGGCAACTGTGATGTTATGGTCTGACTCGCTGCAAACTTCGGTCAGTTGA 864 0.4525 MLQTLGGVTPRFVNRSWLRNLTVRAMTFSSSSDYGDQSRGGLPRFYSEILPPSKGSVIRVQGDEFWHMTKVLRLSTNDRVQLFNGKGGLVEGCIQDIDRSGLDFVASSDLISIPPQNTQLHVFAGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMVLKDPIEINDLLHLIAQSKLALVATAKATPVLSALTSLEKETSGLIIIGPEGDFTEKETKMMMEAGATAVSLGPHRLRVETATISLLATVMLWSDSLQTSVS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00433 287 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 41 284 IPR006700 GO:0006364|GO:0008168
Vian3g00433 287 SUPERFAMILY alpha/beta knot 118 279 IPR029028 -
Vian3g00433 287 FunFam uncharacterized protein LOC106771328 isoform X2 41 286 - -
Vian3g00433 287 NCBIfam RsmE family RNA methyltransferase 57 276 IPR006700 GO:0006364|GO:0008168
Vian3g00433 287 Pfam RNA methyltransferase domain 118 275 IPR046886 -
Vian3g00433 287 Pfam RNA methyltransferase PUA domain 61 104 IPR046887 -
Vian3g00433 287 SUPERFAMILY PUA domain-like 43 102 IPR015947 -
Vian3g00433 287 CDD RsmE-like 120 273 IPR046886 -
Vian3g00433 287 Gene3D - 41 285 IPR029026 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00433 K09761 - gmx:100777253 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00433 3 4067596 4070524 Vian3g00433 3 4067596 4070524 ECH