Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00405 ATGGCAGTGACACCTTTCGTTTCCCTCTCTTTCTTGTTTCTCTTTCTCCATTACCCCCTCCTATCCCTGTCAACCAATCCGGAAGGGAATGCTCTGCATGCTTTGAGAAGCAGGCTTTCTGATCCCAACAATGTGTTGCAGAGTTGGGACCCAACACTGGTTAATGCCTGTACTTGGTTCCATGTTACCTGTGATTCCAACAATCATGTGATTCGCTTTGATGTTTCTAATAACGACCTATGTGGAACAATACCAGTAGAGGGCAACTTCGAATCTTTCCCAATGGAAAGTTTTGAAAACAACAGGTTTTGTGGTCCTGAACTGAAAGGACTTGTTCCATATGATTTTGGATGCTGA 357 0.437 MAVTPFVSLSFLFLFLHYPLLSLSTNPEGNALHALRSRLSDPNNVLQSWDPTLVNACTWFHVTCDSNNHVIRFDVSNNDLCGTIPVEGNFESFPMESFENNRFCGPELKGLVPYDFGC 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00405 118 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vian3g00405 118 Gene3D Ribonuclease Inhibitor 22 72 IPR032675 -
Vian3g00405 118 Gene3D Ribonuclease Inhibitor 73 106 IPR032675 -
Vian3g00405 118 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00405 Vian-Chr3 3825180 3827444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00405 24 117 Receptor kinase-like Gene Family AT1G34210 53.684 6.07e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00405 - - gmx:100306422 139.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00405 3 3825180 3827444 Vian3g00405 3 3825180 3827444 ECH