Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00396 ATGACCATCGACATCCAGACCTTGGAAGACAGGTATGTTGATTCTTGCAGGAGACAGGGTGTCTTGGCTAATTCTTCTATTTTGTCAAGTCTTTTCAAGGCTGAGGTCAAAAAGTCCAATCATGAACTGTGCAAGCTGGAGATTTTAATTGATGACCTAAAGGATGTTGATATTGCTCCACTTCTTGACTTGTGCATGAACTTTGATGCTTCTGAAATAGAAGCTGTTGATGTTCGTAATGAATCATCATGTGTATTAAATGGAGAACATGCATTGTCATTGATGCGTGCTGTTAATAAAAAGCTTCGAGTAGTGCATCTACAGGATCTGTTGCATGGGAAGGACTTCTTACGGGATATTTCACAAAGAGGTTTGGCATGCCAAGTTTTGACATTGAGGTGCTCATGTTTCCGAAAGCTGAACTTAACGGGAAAGTTCATGCATATGCATACCCTAAATCTTGATTTCAGTACTTCCCTTACGAGTTTCCAGGAGGAATGTTTCAATTGTATGCCCAAGCTAATGCGCCTTTCAATGTGTGATACAAGGATTACAAATCTTTGGACAACTGTTGCAGCTCTCTCTAAGCTTCCTTCTTTAGTGGAATTAAGGTTTCAGTATTGGCAGTATTGCAATGATGCTGGGACATCTTTTACCTCATGCAGTGGGAAGTCTGATGACACTGCTGATTTTAGCCTGCTTGATAGAATTCCTTTTATTGTTGAACCCTTGACCAATACAACTGAACTGACAGATCCCAACTTTAGTGCTGAAGATCCACTAAGGAATTTTTATTCCTTGGATGAAGAAGTTATAAATCATGATGTTCAAAGCATGGCTGAGGATTCGTCTGATGACAGTGAAGTTGACTTTACTAGTCGTCATCATAGATACTGGTTGTCTTTTCCTGGGTGGAGTGCTGAAGTGCCTCTTCTTTATGAGAATGAAGATGAAGAAGATTCATCTCAAGGCACTTTTATGGAACCTATTACTGATGTTTCTATGAAGTATATGTCTCGCCATGCATCACCAATATGCTATGAGAAGCATTACAGAGAGTTCATGATTGCTTCATTGCCAAATCTGAAAAATTTAGATAATATGCCTATCAGAAAGATTGACAAGGAAAGGGCTACTGGAATATTTTCTCAATACTTTGAATATCTTCCATATAAATGGAAGCACAAAGAGAGTGTTGTAAGTATCTTACAGAAGAGAGAAATAAAATCAGGCCAGAATAAGGTGCACTCTTCCAAGAATAGGACGTCATATCCTTCTAGACAATCCCAATATTTTTATACTAGGTCTCTTTCTGCTGCTAAATTGGGATCCTCAACTTGGCCTTTCTTGCATCCCCTTTCTCTAATAGGATCTGAACTGGACAAGGGCTTTCATCCAAGGCAGTTTGAGTATCATCCATCTGACTCCAGTTTGATGGTGTTTGGAACTTTAGATGGTGAAGTAGTTGTAATCAACCATGAGAACGAACATATTGTTAGTTATATTCCATCACTTGGAGCAATGAATAGTGTTTTGGGTCTCTGTTGGCTCAAAAAATATCCCTCTAAGCTTATAGCAGGATCAGACAATGGTTCCTTGAAATTGTATGACATCCACCACATACCAAGAAAAGTTACTGGCATACATGGGAATTTTGGTTGGGTTACGTTTGATGAATTTGACCAGTTGACATCTGTACATGTTAACTCTACGGATGAACTATTTCTTGCAAGTGGTTACTCAAGAAATGTTGCTTTATATGATATCAACAGTGGGAAACGCTTACAAGTTTTCACAGATATGCATCGTGGACATATTAATGTAGTCAAGTTTGCTAATCATTCCCCATCGATTTTTGCCACTTCATCGTTTGATCATGATGTGAAGATGTGGGACTTGAGACAAAAACCAATACACCCCTGCTTTACAGTTTCAAGCTCCAGAGGAAATGTGATGGTTTGCTTTTCTCCAGATGATCAATATATTCTTGCTTCAGCGGTTGATAATGAGGTTAGACAATATCTGGCTGTTGATGGTAGACTTCACTTAGTTTTTGATATAGCTCCCACTGAAAGTTCTCAAAATTACACCCGTTCTTATTACATGAATGGGAGGGACTACATCATAAGTGGGAGTTGTGATGAGCACGTTCGTATTTGTTGTGCTCAAACAGGGAGGCGCCTAAGAGATATATCCCTTGAGGGAAGAAACTTAGGAAGTTCCGTGTTTGTTCAGTCTCTGAGGGGTGATCCTTTCCGGGATTTCAATTTGAGCGTGTTAGCAGCTTACATGCGGCCAGGCTCCAAGTCTAAAATTGTCAAGATCAACTTACTAGCATCTAGTGGCCATGCCAACAAGGATGATTCTTTTGATCTGCACCCTTGTCCATTTCACAGCATGGGAGCTTGA 2409 0.3968 MTIDIQTLEDRYVDSCRRQGVLANSSILSSLFKAEVKKSNHELCKLEILIDDLKDVDIAPLLDLCMNFDASEIEAVDVRNESSCVLNGEHALSLMRAVNKKLRVVHLQDLLHGKDFLRDISQRGLACQVLTLRCSCFRKLNLTGKFMHMHTLNLDFSTSLTSFQEECFNCMPKLMRLSMCDTRITNLWTTVAALSKLPSLVELRFQYWQYCNDAGTSFTSCSGKSDDTADFSLLDRIPFIVEPLTNTTELTDPNFSAEDPLRNFYSLDEEVINHDVQSMAEDSSDDSEVDFTSRHHRYWLSFPGWSAEVPLLYENEDEEDSSQGTFMEPITDVSMKYMSRHASPICYEKHYREFMIASLPNLKNLDNMPIRKIDKERATGIFSQYFEYLPYKWKHKESVVSILQKREIKSGQNKVHSSKNRTSYPSRQSQYFYTRSLSAAKLGSSTWPFLHPLSLIGSELDKGFHPRQFEYHPSDSSLMVFGTLDGEVVVINHENEHIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIHHIPRKVTGIHGNFGWVTFDEFDQLTSVHVNSTDELFLASGYSRNVALYDINSGKRLQVFTDMHRGHINVVKFANHSPSIFATSSFDHDVKMWDLRQKPIHPCFTVSSSRGNVMVCFSPDDQYILASAVDNEVRQYLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCDEHVRICCAQTGRRLRDISLEGRNLGSSVFVQSLRGDPFRDFNLSVLAAYMRPGSKSKIVKINLLASSGHANKDDSFDLHPCPFHSMGA 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00396 802 Gene3D - 465 750 IPR015943 GO:0005515
Vian3g00396 802 Pfam WD domain, G-beta repeat 603 632 IPR001680 GO:0005515
Vian3g00396 802 Gene3D Ribonuclease Inhibitor 117 381 IPR032675 -
Vian3g00396 802 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 634 IPR001680 GO:0005515
Vian3g00396 802 SMART WD40_4 495 537 IPR001680 GO:0005515
Vian3g00396 802 SMART WD40_4 553 588 IPR001680 GO:0005515
Vian3g00396 802 SMART WD40_4 591 632 IPR001680 GO:0005515
Vian3g00396 802 SMART WD40_4 637 675 IPR001680 GO:0005515
Vian3g00396 802 SUPERFAMILY RNI-like 92 221 - -
Vian3g00396 802 SUPERFAMILY WD40 repeat-like 465 731 IPR036322 GO:0005515
Vian3g00396 802 SMART LRRcap_2 348 366 IPR003603 -
Vian3g00396 802 PANTHER BNAC09G30780D PROTEIN 2 802 IPR046377 GO:0071493|GO:0080008
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00396 Vian-Chr3 3741218 3749476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00396 518 718 Miscellaneous Gene Families AT5G08390 23.267 5.49e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00396 - - gmx:100806443 1479.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00396 3 3741218 3749476 Vian3g00396 3 3741218 3749476 ECH