Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00190 ATGGCCAAGCCAGTGTCCATTGAGGTATGGAATCCAAATGGCAAATACAGGGTCATCAGCACAAAATCAATGCCTGGAACACGTTGGATTAATCTTCTCATTCAGAATGATTGTCGCCTTGAAATATGTACTGAGAAAAAAACGATACTGTCAGTTGAAGACATCATTGCTTTGATTGGTAGTAAGTGCGATGGAGTTATAGGACAGTTGACCGAAGACTGGGGAGAAGAGTTGTTCTCTGCTTTGAGCAGAGCTGGAGGCAAAGCTTTCAGTAACATGGCTGTTGGTTATAACAATGTGAATGTTGATGCTGCAAACAAGTATGGTGTTGCTGTTGGAAACACTCCTGGTGTGCTCACTGAGACAACAGCAGAGTTGGCAGCTTCGCTGACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAATTCATGAGGGCAGGACTATATGATGGATGGCTTCCTCATTTATTTGTTGGAAACTTGCTCAAGGGACAAACTGTTGGTGTAATTGGAGCTGGTCGTATTGGATCTGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTAATCTACTTTGATCTCTACCAGTCCACACGACTAGAAAAGTTTGTCACAGCTTATGGTGCATTCTTGAAAGCAAGTGGTGAAACCCCAGTGACATGGAAAAGGGCATCAACCATGGATGAGGTCCTCCAGGAGGCGGATATAATTAGTCTCCATCCTGTGTTGGATAAAACCACTTATCATCTAGTCAACAAGGAAAGACTTGCTAAGATGAAGAAGGAAGCAATTCTTATAAATTGCAGTAGAGGGCCTGTTATTGATGAAGCTGCACTGGTGGAGCATTTAAAAGAGAATCCACTGTTTCGAGTAGGACTTGATGTGTTTGAGGACGAGCCCTACATGAAACCTGGTCTTGCAGAGTTGAAGAATGCCATTGTGGTACCCCACATTGCATCTGCCTCCAAGTGGACCCGTGAGGGAATGGCTACACTAGCAGCTCTAAACGTTCTGGGTAAGATTAAAGGGTATCCAGTATGGTTTGATGCCAATAGGGTGGAACCATTCCTCAATGAGAATGCCCAGCCACCAGCTGCATGCCCAAGCATTGTCAATGCAAAAGCTCTGGGTTTGCCAAGTTCAAAGCTATAA 1161 0.4436 MAKPVSIEVWNPNGKYRVISTKSMPGTRWINLLIQNDCRLEICTEKKTILSVEDIIALIGSKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVNVDAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKASGETPVTWKRASTMDEVLQEADIISLHPVLDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEAALVEHLKENPLFRVGLDVFEDEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLNENAQPPAACPSIVNAKALGLPSSKL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00190 386 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 38 349 - -
Vian3g00190 386 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 129 322 IPR006140 GO:0051287
Vian3g00190 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 323 IPR036291 -
Vian3g00190 386 Gene3D - 19 346 - -
Vian3g00190 386 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 37 156 - -
Vian3g00190 386 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 37 346 IPR006139 GO:0016616|GO:0051287
Vian3g00190 386 Gene3D - 118 321 - -
Vian3g00190 386 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 168 196 IPR029752 -
Vian3g00190 386 CDD GDH 16 346 - -
Vian3g00190 386 FunFam Glycerate dehydrogenase HPR, peroxisomal 118 321 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00190 K15893 - gmx:547640 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00190 3 1611059 1614004 Vian3g00190 3 1611059 1614004 ECH