Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00186 ATGCCCAAACCTGTTGTTTTTCGCAAGATGGGGGTTCAACGACATGAAGCCCTTGCGGAAGACGAGCCTGCTGAAAATGCTTGTGCTAGTAGTGCTTCGAACCAAGGTGCTCTTCCCAGTGAGTCTGCCAATAGCAATCCATGTGTAAATACTGAAAGTAGTGCAGTTAATGAATCGGGTGTTATTTTTTTTAAGAAAAGTAATACATCACACATCTATAGACAAGATGTTGTGAAAAATATTACCAGTGGCATGATTGGGATTGTGACAGAAGTTGCTGGTGATTCAGATTCAGATTCAGATAGCAGCATTACTGATGACGAGAATGATAGTGAGGATGATGATGGTGATGGTGAGGAAGGCGATGATAGTAATAATGCTAGCAGGAATTCTGAAAGTAATGTTTCTGCTGGGCATTGTAAAACCGATGCACTTCTGGCTGACCAGTTGCGTGTACTGTGGATGGACGAATCTGAATCCACTCAAAATTTCCACGACGTTGAAGTTGTTGATCGTGGATTTTTGCATGGTGATTTTGTTGCTGCGGCTTCAGACCCTACTGGGCAAGTGGGTGTGGTGGTTGATGTCAATATATGTGTGGATATGTTGTCCCATGATGGCTCTATAATAAAAGATGTCTCGTCAAAAAACATACAGCGTATTAGGGATTTCACTGTTGGTGATTATGTGGTGCATGGGCCTTGGCTAGGCAGAGTCGATGATGTTTTGGATAATGTAACTGTCTTATTTGATGATGGTTCAGTTTGTAAAGTTTCGAAAGCAGATCCATTGAATCTTAAACCAATTTCTAAGAATATTGTTGAAGATGGGCATTTTCCCTATTACCCAGGGCAGCGGGTAAGGGCGAGCTCCTCATCAGTTTTCAAGAATTCAAGATGGCTGTCTGGCTTGTGGAAAGCTAATAGGTTAGAAGGTACAGTAACTAAAGTTACAGTTGGATCAGTATTTGTTTATTGGATAGCATCGGCAGGTTATGGGCCATACTCTTCTACTGCCCCAGCCGAGGAGCAGAGTCCAAAAAACTTAAAATTGTTGTCTTGTTTTGCTCATGCAAATTGGCAATTGGGTGACTGGTGTCTCTTACCCTCATCAGTACTGTCATCCTCAGCTTCCATGGACAAAGGCATGTCAAAATTGGAACTTAACGATTCTGCTAACACTGAATTAGATTCTAATCAGACAGGAAGTGGGTGTGATTCAGAAGAAGCTACTGTTGAGGAAACAAATGGGAATAAGGATACCATGGAGCTTGATCCAGCTGATACTTTGCAAGGGAAGGATGGACATGAGAAAAGTAATCCTTCACGTGATTCTAGCTCATGCTGCAGTTCTATCTCCGTATCAAAGGAACCTGTCCATGAAGCTTGGCCTCTTCACCGCAAGAAAATTAGGAAAGTTGTCATCAGGAAAGAAAAGAGGGCCCGAAAGAAAGAGGAAAGTTTTGAGAAAGCTCTTTTGATTGCCAACACAAGAACAAAAGTTGATGTTGCATGGCAGGATGGAACAATAGGGCATGAACTGAATTCTACAAGTTTAATTCCTATAGATAATCCTGGTGACCATGAATTTGTTTCAGAACAATATGTGGTAGAGAAGACCTCCGATGATGGTAATGATATTTCTGAAGCTAGGCGAGTTGGGGTGGTGAGAAGTGTTAATGCTAAGGAGCGGACAGCTTGTGTGAGGTGGTTAAAAAAGGTTGCTAGGGCAGAAGATCCTCGAGAGTTTGACAATGAAGAAGTTGTAAGTGTGTATGAGCTAGAGGGCCATCCAGATTATGATTACTGCTATGGGGATGTGGTTGTTCGCCTGACACCTGTGTCTGCACATTTAGAAACAGCTTCTGTTGAGGAGTCCACTGAGAAATCAGAGCAGAAAACTGAAGACTGTGGGATTAAAAAGGAAGCAAAAATCCAATCTGATGCTAATAGAGTAGAAAATGCATCTAGTGATACTTCTATGCAATTTTCTGATCTCTCTTGGGTTGGAAATATAACTGGCCTTAAGAATGGTGATATTGAAGTTACTTGGGCTGATGGGATGGTGTCAACGGTTGGACCCCAAGCAATCTATGTGGTTGGTCGAGATGATGATGATGAATCAATTGCTGCTGGGAGTGAAGTAAGTGATGCTGCTAGCTGGGAAACTGTTAATGATGATGAAATGGAAGTCCTAGAGGATTCCAGAGAGGATATTCAGAGGGAAAATTCAAGCAGTGTTACGTCTGAGACAGAAGAAAGTGGAGAGAATGATTTTGGTAGGGCTGCCGCACTTTCTGTTCCCCTAGCAGCATTTCGGTTTGTCACTAGACTTGCCAGTGGAATATTCTCAAGGGGCCCAAGGAACTTGGATTCTATTGACATGCAGATAAAAGCTGGACATGAACATCCATCACCAGTAGTTAATGATGAGTCTAGTTCGCAGAGACTTATTCCCATTAATGGTGATACTTCAGGCAGTAAGAATGGAAGATATGAGGAGGTTGCGTCGGAAGCAACTGAAACTGTGGAAGCATGTGACACCCTCTATGGCTTGAAAAAGGAAGATGCTCTTGCAAGTTGTGATAATGGGAGTTGCAGTTTGAATCATTTTGACATAACTCAAGATCCATCAGACCACTATTTTATTGGTGCAAATGGACAGAGTAACAACAGGAAATGGTTAAAGAAAGTGCAACAAGATTGGAACATACTGCAGAATAACCTTCCTGAGGAAATCTATGTACGAGTTTATGAAGATAGAATGGATCTCTTGAGAGCAGTTATTGTAGGGCCATATGGAACCCCTTACCAAGATGGACTCTTTTTCTTTGATTTTCACCTTCCGCCAGAATACCCTGATGTTCCACCGTCTGCATACTATCATTCTGGTGGCTGGCGAATTAACCCTAATTTGTATGAGGAAGGGAAGGTTTGCCTTAGCCTTCTGAATACATGGACAGGCAGAGGAAATGAAGTATGGGATCCAAAATCCTCTAGCATACTTCAAGTCCTGGTTTCACTTCAAGGTTTAGTACTCAATTCTAAGCCTTACTTCAATGAAGCTGGGTATGATAAGCAGATTGGGACAGCCGAAGGAGAGAAGAATTCATTGTCATACAATGAGAATACCTTTTTACTTAATTGCAAGACTATGATGTATCTTATGAGGAAACCCCCCAAGGATTTTGAAGTGCTTGTCAAAGAACATTTTAGGAGGAGGGGCCATAACATCCTTAAGGCTTGTGATGCATATATGAAAGGTTGCTTGATTGGCTCTTTGACTAGAGATGCCTCCGTTAGTGAAAAAAGCGGTCAGAATTCAACCTCTGTGGGTTTCAAGTTGATGTTAGCCAAGATAGTGCCAAAGCTTTTCTCGTCACTTAGTGAGGTTGGAGCTGATTGCGAGGAATTTAGGCATCTCAAAGATTTGTAG 3435 0.4201 MPKPVVFRKMGVQRHEALAEDEPAENACASSASNQGALPSESANSNPCVNTESSAVNESGVIFFKKSNTSHIYRQDVVKNITSGMIGIVTEVAGDSDSDSDSSITDDENDSEDDDGDGEEGDDSNNASRNSESNVSAGHCKTDALLADQLRVLWMDESESTQNFHDVEVVDRGFLHGDFVAAASDPTGQVGVVVDVNICVDMLSHDGSIIKDVSSKNIQRIRDFTVGDYVVHGPWLGRVDDVLDNVTVLFDDGSVCKVSKADPLNLKPISKNIVEDGHFPYYPGQRVRASSSSVFKNSRWLSGLWKANRLEGTVTKVTVGSVFVYWIASAGYGPYSSTAPAEEQSPKNLKLLSCFAHANWQLGDWCLLPSSVLSSSASMDKGMSKLELNDSANTELDSNQTGSGCDSEEATVEETNGNKDTMELDPADTLQGKDGHEKSNPSRDSSSCCSSISVSKEPVHEAWPLHRKKIRKVVIRKEKRARKKEESFEKALLIANTRTKVDVAWQDGTIGHELNSTSLIPIDNPGDHEFVSEQYVVEKTSDDGNDISEARRVGVVRSVNAKERTACVRWLKKVARAEDPREFDNEEVVSVYELEGHPDYDYCYGDVVVRLTPVSAHLETASVEESTEKSEQKTEDCGIKKEAKIQSDANRVENASSDTSMQFSDLSWVGNITGLKNGDIEVTWADGMVSTVGPQAIYVVGRDDDDESIAAGSEVSDAASWETVNDDEMEVLEDSREDIQRENSSSVTSETEESGENDFGRAAALSVPLAAFRFVTRLASGIFSRGPRNLDSIDMQIKAGHEHPSPVVNDESSSQRLIPINGDTSGSKNGRYEEVASEATETVEACDTLYGLKKEDALASCDNGSCSLNHFDITQDPSDHYFIGANGQSNNRKWLKKVQQDWNILQNNLPEEIYVRVYEDRMDLLRAVIVGPYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFEVLVKEHFRRRGHNILKACDAYMKGCLIGSLTRDASVSEKSGQNSTSVGFKLMLAKIVPKLFSSLSEVGADCEEFRHLKDL 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00186 1144 MobiDBLite consensus disorder prediction 1 52 - -
Vian3g00186 1144 MobiDBLite consensus disorder prediction 412 441 - -
Vian3g00186 1144 MobiDBLite consensus disorder prediction 27 52 - -
Vian3g00186 1144 Gene3D Ubiquitin Conjugating Enzyme 863 1128 IPR016135 -
Vian3g00186 1144 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 893 1053 IPR000608 -
Vian3g00186 1144 Pfam Ubiquitin-conjugating enzyme 898 1042 IPR000608 -
Vian3g00186 1144 MobiDBLite consensus disorder prediction 394 451 - -
Vian3g00186 1144 MobiDBLite consensus disorder prediction 733 758 - -
Vian3g00186 1144 MobiDBLite consensus disorder prediction 92 136 - -
Vian3g00186 1144 MobiDBLite consensus disorder prediction 802 830 - -
Vian3g00186 1144 MobiDBLite consensus disorder prediction 394 411 - -
Vian3g00186 1144 SMART ubc_7 896 1053 - -
Vian3g00186 1144 MobiDBLite consensus disorder prediction 100 121 - -
Vian3g00186 1144 MobiDBLite consensus disorder prediction 807 830 - -
Vian3g00186 1144 SUPERFAMILY UBC-like 874 1060 IPR016135 -
Vian3g00186 1144 CDD UBCc 896 1046 IPR000608 -
Vian3g00186 1144 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 90 1135 - -
Vian3g00186 1144 FunFam Probable ubiquitin-conjugating enzyme E2 23 859 1132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00186 Vian-Chr3 1575463 1583475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00186 171 371 Miscellaneous Gene Families AT2G33770 42.079 3.07e-50 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00186 K10581 - gmx:100809513 1876.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00186 3 1575463 1583475 Vian3g00186 3 1575463 1583475 ECH