Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00176 ATGGATGCCCAGATTGATCACTATGCGGTGCTAGGGTTACCATCGGGAGAAGAAGGTGCCAAGCTAACGGAGAAAGAAATCAACAAGGCCTACAGATGGAAGGCTCTGGAACTGCACCCCGACAAGAGGCCCGACGACCCCAACGCCGCCGCCAACTTCCAACAGCTCCGCACATCCTACGACATTCTCCGGGATGACAAGGCCCGTAAGTTATTCGACGAACTATTGCGTGTCAAGCGCGACCGCGAGCTCCGCCACTCACAGCGCGATGGAAAGCGCCGCAAGATGGTTTCCGATCTCGAACGCCGGGAGCGCGATGCCAACGCCCCCGACCTCGCTGCCAAGGAGCGTGAAGAGGAGGCCAGGATCGCGCGCCAGCTCAAGGAGGAGATCGCTAGAATTCGTGCCATGCACGGCATGAAGGCGGCGCCACCACCTCCACCGGAGACGGAGAAGGAGAGTGGCCGTGGCCGTGCTGGTGGGGGAGGTGGAGTGGATCCAGAGAAGGTTCTGAAGGTTTCTTGGGAAAAGGTGGGTGAGGATTATTCGGCTGATAAGTTGAGGCAATTGTTTTCAGAGTTTGGTGAAGTGGAAGATGTTGTCATCAAAGGGAGCAAGAAGAAGGGTTCTGCACTCGTTGTTATGGCCACTAAAGAAGGAAGTGTTGCTGCAACGGGAAGTGTGATTGGTCATCTTGCTAATCCGTTGCTGGTTTTACCTCTTAAACCGGCAACTATTGCAGATTCTTCCAGTTTTCCGAAGTCTGCTGAAACTGCCAAATTGAGTAATCTGGTTGGTGCCGGGTATCAAGCTTTTGAGGATTCTGTTCTGAAGAAACTGCAAAAGGCTGCAGAAAAACAAAAATGA 867 0.5352 MDAQIDHYAVLGLPSGEEGAKLTEKEINKAYRWKALELHPDKRPDDPNAAANFQQLRTSYDILRDDKARKLFDELLRVKRDRELRHSQRDGKRRKMVSDLERRERDANAPDLAAKEREEEARIARQLKEEIARIRAMHGMKAAPPPPPETEKESGRGRAGGGGGVDPEKVLKVSWEKVGEDYSADKLRQLFSEFGEVEDVVIKGSKKKGSALVVMATKEGSVAATGSVIGHLANPLLVLPLKPATIADSSSFPKSAETAKLSNLVGAGYQAFEDSVLKKLQKAAEKQK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00176 288 MobiDBLite consensus disorder prediction 139 166 - -
Vian3g00176 288 Coils Coil 117 137 - -
Vian3g00176 288 CDD DnaJ 6 65 IPR001623 -
Vian3g00176 288 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vian3g00176 288 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vian3g00176 288 PRINTS DnaJ domain signature 48 68 IPR001623 -
Vian3g00176 288 SUPERFAMILY Chaperone J-domain 4 76 IPR036869 -
Vian3g00176 288 Gene3D - 165 251 IPR012677 -
Vian3g00176 288 ProSiteProfiles dnaJ domain profile. 6 76 IPR001623 -
Vian3g00176 288 SUPERFAMILY RNA-binding domain, RBD 178 224 IPR035979 GO:0003676
Vian3g00176 288 Pfam DnaJ domain 6 73 IPR001623 -
Vian3g00176 288 Gene3D DnaJ domain 1 103 IPR036869 -
Vian3g00176 288 SMART dnaj_3 5 68 IPR001623 -
Vian3g00176 288 MobiDBLite consensus disorder prediction 85 120 - -
Vian3g00176 288 PANTHER DNAJ DOMAIN CONTAINING PROTEIN, EXPRESSED 1 288 - -
Vian3g00176 288 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Vian3g00176 288 CDD RRM_DNAJC17 169 241 IPR034254 -
Vian3g00176 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 224 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00176 Vian-Chr3 1453649 1456130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00176 5 122 Miscellaneous Gene Families AT1G16680 31.356 1.70e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00176 K09537 - gmx:100792307 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00176 3 1453649 1456130 Vian3g00176 3 1453649 1456130 ECH