Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03251 ATGGTGATGAGTTTATCATTTTCTTCGGTGACAGTAAAGCCTTTTTCCATGAGTGTGAGCAATAAGAAAGCATGTCGTAGCAGAAGAAGATTTAGTGTTACAAGGTCAGAAATAACCGTGGCTCCCAATCCCCAGCAGAGAAGGCAATTATCGAAGCAAGGATTTCCTCTAACGGATTTACACGTACAAGAGAAATATCTGCGCCGAATACGCCAAGACCTTCTATCTAGGAACCTTGCTTATGACGGAAGAAAGACAGAAAGCTATATGGGCAATTTATGGAGGACGGATGAGCTGGTTGATGGTCCTAACGCTGCGTATATGAGCTCTGCTGTTCTTGATAGATGGGAAGATAGATTGCACGACATTTTCAATGGGCATCCCTATGATATGCTTGATGCTGCTCTTACTGATACCCTCTCCAAGTTTCCCTTGGATATCAAGCCTTTCAGAGACATGATACTAGGAATGAGAATGGATACGAGGAAAGCTCGCTACAACAATTTCCAGGAGCTATATCTTTATTGTTACTATGTGGCGGGAACTGTTGGCTTAATGACTGTTCCAATAATGGGTATCGCACAGGAGTCGGTTGTCCCTGTACAAAGTGTATATGATGCTGCACTATATCTGGGTATAGGAAATCAACTCACCAACATTCTTAGAGACGTGGGAGAGGATGCATTAAGAGGTAGAGTGTATCTTCCCCAAGACGAACTAGCCCAGTTTGGATTATGTGACAAGGATGTGTTTTCAAGAAATGTGAGTGAAAGATGGAGAAAGTTTATGAAACATCAAATTACGAGGGCAAGATTCTACTTCAACCGGGCAGAAGAAGGAGTTTCTCAGCTTGAAAAGGCCAGCCGTTGGCCGGTTTGGTCCTCGTTAATATTGTATCGTAAGATCCTAGATGCAATTGAAGACAACGACTACGACAATTTGACTAAACGAGCTCATGTGGGACGAGCTAAGAAATTTTTTACGTTGCCTGAAGCTTACACTAGATCTCTTTCAAATTACAAAACGAAATTTCGTCCTTCTTTGACAAGGCTTATTTAG 1059 0.4212 MVMSLSFSSVTVKPFSMSVSNKKACRSRRRFSVTRSEITVAPNPQQRRQLSKQGFPLTDLHVQEKYLRRIRQDLLSRNLAYDGRKTESYMGNLWRTDELVDGPNAAYMSSAVLDRWEDRLHDIFNGHPYDMLDAALTDTLSKFPLDIKPFRDMILGMRMDTRKARYNNFQELYLYCYYVAGTVGLMTVPIMGIAQESVVPVQSVYDAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDKDVFSRNVSERWRKFMKHQITRARFYFNRAEEGVSQLEKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAHVGRAKKFFTLPEAYTRSLSNYKTKFRPSLTRLI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03251 352 Gene3D Farnesyl Diphosphate Synthase 93 334 IPR008949 -
Vian2g03251 352 Pfam Squalene/phytoene synthase 96 322 IPR002060 GO:0009058
Vian2g03251 352 FunFam Phytoene synthase chloroplastic 84 331 - -
Vian2g03251 352 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 95 338 - -
Vian2g03251 352 SUPERFAMILY Terpenoid synthases 95 339 IPR008949 -
Vian2g03251 352 CDD Trans_IPPS_HH 95 325 IPR033904 GO:0004311
Vian2g03251 352 ProSitePatterns Squalene and phytoene synthases signature 2. 211 236 IPR019845 GO:0016765
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03251 Vian-Chr2 52755098 52756875 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03251 K02291 - gmx:100782394 525.398