Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03250 ATGTGCACGGTATCAGGTTCTATCCTTCTGCTTCTGTGCTATCCTTCATCTTCTTCTTCAATATCACTTGTTTGTTGTTATTCCAATACCATAGCCAAAAAGAGGGTTGGGAATGGCATAAGCCATTTAAGTGCGGCCACCGCCACTTGTGCTATGGCTAAAGATGTGTGGAGCCGAACATGTGGATCTGCTTGTTCCTCTCCCATTCCCAGGGAAGGTGGCCGCAGAAGGCAACAACAAGGTACGTGCTTGGACCGCAGTGTGGACATGGAAGAGTTATTAGCGGCAATTGGGGAGACCCAGAACGAGGATGAACTGTATGCGGTGATGTCCCCCTACAGCGGGAGGCAGCTGTCTATTCGCTTCATGGTTTCCCTGCTCTCCCGCGAGCCCGATTGGCAACGCACTCTTGCCCTTCTCGATTGGATAAACGAAAAGGCCCTCTATTCCCCTTCCCTCTTCGCCTACAACGTCGTCCTCCGCAACGTCCTTCGGGCCAAGCAGTGGCACCTCGCCCACGGCCTGTTCGACGAAATGCGCCACAAGGGCCTTTCCCCCGATAGGTACACCTACTCCACCCTCATCACTTCTTTCGCCAAACACGGCTTGTTTGATTCTTCTCTCTTTTGGCTCCAGCAGATGGAGCAAGACAACGTTTCCGGCGACCTTGTCCTCTACAGTAATTTGATCGACCTTGCCCGCAAGTTGTGCGATTATTCCAAGGCCATTTCCATCTTCACCAGATTGAAAGCCTCTACCATTACCCCCGACCTCATTGCCTATAACTCCATGATCAATGTATTTGGAAAAGCCAAGCTCTTCCGCGAGGCTCGCCTTGTTCTTCAAGAGATGGCCGACAATGCTGTTCAACCCGACACCGTCAGCTATTCCACTCTTCTTGCCATCTACGTTGACAATCAAAAGTTTGTTGAAGCGCTTTCTCTGTTCTCTCAAATGAATGAAGCCAAATGCCCGCTTGATCTCACCACCTGTAACATCATGATTGATGTTTATGGCCAGCTTCACATGCCCAAGGAAGCGGATCGCCTCTTCTGGAGCATGAGGAAAATGGGGATTCAACCCAATGTGGTTAGCTACAATACGCTCTTGAGGGTTTATGGAGAGGCTGAGCTATTTGGGGAAGCCATCCACCTGTTTCGCTTGATGCAGAGTAAAGATGTACCGCAGAATGTTGTCACTTACAACACTATGATTCATATCTATGGTAAGACCCTTGAGCACGAGAAAGCTACCAATCTCGTTCAAGAAATGAAGAAAAGGGGTATTGAACCCAATGCCATCACTTACTCGACCATAATATCCATTTGGGAAAAGGCAGGCAAACTGGACCGCGCAGCTATCTTGTTTCAAAAATTAAGGAGTTCAGGAGTTCGAATTGACGAGGTTCTTTACCAGACAATGATTGTAGCCTACGAGAGGGCAGGTTTAGTTGCTCATGCCAAGCGTCTGCTGCATGAGCTTAAGAGACCGGACAACATTCCCAGGGAGACTGCAATTGCAATTCTTGCCAGAGCTGGTAGAGTTGAAGAGGCTACCTGGGTTTTTCGTCAGGCTTTTGATGCTGGAGAAGTTAAAGATATATCTGTGTTTGGGTGCATGATTAATCTTTTCTCTAAGAACAAAAAGTACAGCAATGTCGTTGAAGTGTTTGAGAAGATGAGACAGGTTGGATATTTTCCTGATTCTGATGTTATTGCTCTCGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGATAAAGCAGATGCTTTATATAGACAGATGCACCAGGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAGGATTTCATGATGGTAGAGTCATTGTTTGAGGAGCTGGATTCAAATCCTAATGTCAATAAGAAGGAGTTGCATCTTGTTGTTGCTAGCATTTATGAGCGAGCAGATAGACTTAACGATGCTTCCCGAGTCATGAATAGGATGAACCAAAGAGCAATCAGAAGTCACGATCATACTTAG 2031 0.4682 MCTVSGSILLLLCYPSSSSSISLVCCYSNTIAKKRVGNGISHLSAATATCAMAKDVWSRTCGSACSSPIPREGGRRRQQQGTCLDRSVDMEELLAAIGETQNEDELYAVMSPYSGRQLSIRFMVSLLSREPDWQRTLALLDWINEKALYSPSLFAYNVVLRNVLRAKQWHLAHGLFDEMRHKGLSPDRYTYSTLITSFAKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLCDYSKAISIFTRLKASTITPDLIAYNSMINVFGKAKLFREARLVLQEMADNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSQMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEAELFGEAIHLFRLMQSKDVPQNVVTYNTMIHIYGKTLEHEKATNLVQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAIAILARAGRVEEATWVFRQAFDAGEVKDISVFGCMINLFSKNKKYSNVVEVFEKMRQVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHQEGCVFPDEVHFQMLSLYGARKDFMMVESLFEELDSNPNVNKKELHLVVASIYERADRLNDASRVMNRMNQRAIRSHDHT 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03250 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Vian2g03250 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Vian2g03250 676 SUPERFAMILY HCP-like 210 428 - -
Vian2g03250 676 Gene3D Tetratricopeptide repeat domain 498 676 IPR011990 GO:0005515
Vian2g03250 676 NCBIfam pentatricopeptide repeat 536 568 IPR002885 -
Vian2g03250 676 NCBIfam pentatricopeptide repeat 260 293 IPR002885 -
Vian2g03250 676 NCBIfam pentatricopeptide repeat 330 363 IPR002885 -
Vian2g03250 676 NCBIfam pentatricopeptide repeat 155 187 IPR002885 -
Vian2g03250 676 NCBIfam pentatricopeptide repeat 294 327 IPR002885 -
Vian2g03250 676 NCBIfam pentatricopeptide repeat 364 395 IPR002885 -
Vian2g03250 676 NCBIfam pentatricopeptide repeat 189 222 IPR002885 -
Vian2g03250 676 NCBIfam pentatricopeptide repeat 575 604 IPR002885 -
Vian2g03250 676 NCBIfam pentatricopeptide repeat 399 433 IPR002885 -
Vian2g03250 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vian2g03250 676 Gene3D Tetratricopeptide repeat domain 356 425 IPR011990 GO:0005515
Vian2g03250 676 Gene3D Tetratricopeptide repeat domain 235 355 IPR011990 GO:0005515
Vian2g03250 676 Gene3D Tetratricopeptide repeat domain 426 497 IPR011990 GO:0005515
Vian2g03250 676 Pfam PPR repeat family 151 200 IPR002885 -
Vian2g03250 676 Pfam PPR repeat family 397 441 IPR002885 -
Vian2g03250 676 Pfam PPR repeat family 256 300 IPR002885 -
Vian2g03250 676 Pfam PPR repeat family 327 371 IPR002885 -
Vian2g03250 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vian2g03250 676 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 236 568 - -
Vian2g03250 676 Pfam PPR repeat 469 496 IPR002885 -
Vian2g03250 676 Pfam PPR repeat 536 564 IPR002885 -
Vian2g03250 676 Pfam PPR repeat 575 600 IPR002885 -
Vian2g03250 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vian2g03250 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Vian2g03250 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Vian2g03250 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Vian2g03250 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Vian2g03250 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Vian2g03250 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vian2g03250 676 Gene3D Tetratricopeptide repeat domain 100 234 IPR011990 GO:0005515
Vian2g03250 676 FunFam pentatricopeptide repeat-containing protein At5g39980, chloroplastic 342 500 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03250 184 670 Glycosyltransferase AT1G05670 20.487 2.04e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03250 - - gmx:100784025 1150.19