Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03247 ATGAGTGCAGAGATTGATTCAACTTCTGCACCTGAACTTCATAAAATGTCTGGAACTTCATCAGTAACAACCCCCAGTGGCCAAAAGCTCTCTATATTTGCAGCCAAATCAGGATTTGTCATCCCTAAAAACAAATTGTCCGGGTCACTGGTCCCTATTTTCCGAGGGGCTAAAAAACACGGGGTCACTGGAGCCATCAATGAAGAAAGTTCAAAACAAACTGAGAGGAAATCAAAATGGGGACATGATCTTACACAGGATGCAACTGTCAGGAGGGGAAAGGCTCTAGCTTTGCAGATTCGAGTGGATCAAATCACAAAGCAGTTGGAATCAGAAAAACTGGAAGTTGGGGACACTCAGAACTTGCCATTGGGAGCTGAGAACACGGATAAAATTAAATCTGGCTCTCAAATGAACGGCAACAAGAAGTCAGAAATGCTCGAACTTGAAAAGCGTGGAGCCATAGGTGAAATACTAAAATTAGATCCCAGTTACAAACCTCCACGTGGTTTTAAACCATTGTTAAAAGAAGCCAGCATTCCTTTGCCTGTTCAAGAATATCCTGGGTACAATTTTGTTGGTCTAATATATGGACCTGAAGGTGATAATCAGAAACAACTAGAAAAGGAAACTGGTGCCAAGATAAAAATTCATGGAACCAAAGCAGAGACAGGAGAGAAAGGTGAAATTAAGCCTGGAACTGATATCCATTCCAGTTACAAGGAGATTGGTGTTAACATATCAGCTGATAGTTTTGAAAAAGTGGATGCAGCAATGTCAATAATTGAACTGCTGATTACCTCTGTAACTGGGAATTTAGACGCTGGCTCTACACCCTCTATATCAGTTTCTAGGGAAAGCACTGATATTCTGTGTCAAAACCGAGAAGGCCAGCCTTCTCATGCAGATTCTGTTTCTCTGGAAAACCAGGCTGTTCTGCAACCAGCAGCTGTTACCCAAAAGTATGAAGATAACTTCCAATACTCTACACCATGGTTTTCAGTGGTTCCTTCTAATACCCCCATTTTTGCTTCATCTGGCACTGTAGCCCACCCAAACCCATTAGGCCTTGCTAGAACTCCCCATTTTTCATCACAAACGTCAAATTCGGTTCCTACTTTTGGTGCTCAACCTGGATTTCAACCAATTATTCCAAATCAACATGTTTCCGTGCAAGCACCACCACCAAGACAGATTTTACACTATCCTCATTTGTCTCAAGCGAGTCCTTTGGGTCACGTTGGGCCCCCAAGAAATGCTTCTATAATATCTGTACGGAATCTGTCAACTCCAACAAATGCTTCACATTCATTTCCTGTTACTTTAAGCCAATCAACTCCAATAGGACAAGTGCAGACATCAGTGTCTTCATTTCCTCTACCCATATCTGGTGTATCACCACTGACCATACCTAACCAGCCCATCACCCATCTTGGGGCCCCTTCTGGACAGAATGAAGCTCTTGTCGCTGTTAAAACATCTATTGGTCCCAGCAATATGGGGTCAATGGCTCCACCTGGAAGACCTGGCTCTCTACATCATCAACCGGAAGTTGCATTTATGCCACCACAGTCAAATATGTCAATGATACCACGATCTGCTTCCTTTCCTCCACAAGTAGGAATATCCCCCGGACCACTATCATCTTTGAGACCTATGTCTGTATCAATACCTGCACCTAAACATTCATCTGTAAACCATTTATCAGGACCTGTTTCATTTCCTTCGTCAGGAATGTCCCCCTCTTTTCCATTGCCTCAGCAAGCAGGAATACCCAATTCTGCTTCTGGAATTGCTCCTTTTCACACCCATGTAAAACCATCTGTCTTGGCGCCATCAAAATCTGGAAATTTTACTTTTCGATCACATCCCCCCAATGCAGACTACAGTCAAGTGGTTTCTGGACCAAACAGTCAAGCAGGTGCTACGCAGGAGCCACCTTCTGGTCCTCGGCCTCCGCCATTTGGGTTTGGCGTGCCTGATCAGCCTCTTCAAAACTTTCCTAGGACACAATTCCCTGCTCAAGTGGATCAAACCATTTCCTTCGGGGGAAGATCAGGTTCCATGTCGAACTCAATTCCTCCACCAAGGCATACTGCATTTCCATATGGTGGTCAACCTGCACCTAGATCTCCAGTCCCACAAATGGGTATGAATAACTTCATTCCTGCTCCGCAAAGGCCAAACTTGACCGGTGCTGTTGCCCAAAGAGGCATGCCTATCCGACAAAGCTACGCCGTTCAGATGGCACGGCCAGATATCCAAATGCCCCTGAATCACAAGTTTGTCAACAATACCCTCATGGCTTCTGGTAAGCTACCATATTCTGCGGACCAAATTTATGACCCCTTTTCACCCACTTCTGCACCTCCACAACAAAAAGGTAATCCTGGACAATGA 2400 0.445 MSAEIDSTSAPELHKMSGTSSVTTPSGQKLSIFAAKSGFVIPKNKLSGSLVPIFRGAKKHGVTGAINEESSKQTERKSKWGHDLTQDATVRRGKALALQIRVDQITKQLESEKLEVGDTQNLPLGAENTDKIKSGSQMNGNKKSEMLELEKRGAIGEILKLDPSYKPPRGFKPLLKEASIPLPVQEYPGYNFVGLIYGPEGDNQKQLEKETGAKIKIHGTKAETGEKGEIKPGTDIHSSYKEIGVNISADSFEKVDAAMSIIELLITSVTGNLDAGSTPSISVSRESTDILCQNREGQPSHADSVSLENQAVLQPAAVTQKYEDNFQYSTPWFSVVPSNTPIFASSGTVAHPNPLGLARTPHFSSQTSNSVPTFGAQPGFQPIIPNQHVSVQAPPPRQILHYPHLSQASPLGHVGPPRNASIISVRNLSTPTNASHSFPVTLSQSTPIGQVQTSVSSFPLPISGVSPLTIPNQPITHLGAPSGQNEALVAVKTSIGPSNMGSMAPPGRPGSLHHQPEVAFMPPQSNMSMIPRSASFPPQVGISPGPLSSLRPMSVSIPAPKHSSVNHLSGPVSFPSSGMSPSFPLPQQAGIPNSASGIAPFHTHVKPSVLAPSKSGNFTFRSHPPNADYSQVVSGPNSQAGATQEPPSGPRPPPFGFGVPDQPLQNFPRTQFPAQVDQTISFGGRSGSMSNSIPPPRHTAFPYGGQPAPRSPVPQMGMNNFIPAPQRPNLTGAVAQRGMPIRQSYAVQMARPDIQMPLNHKFVNNTLMASGKLPYSADQIYDPFSPTSAPPQQKGNPGQ 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03247 799 MobiDBLite consensus disorder prediction 122 141 - -
Vian2g03247 799 FunFam Splicing factor-like protein 1 isoform A 176 279 - -
Vian2g03247 799 Pfam KH domain 191 259 IPR004088 GO:0003723
Vian2g03247 799 MobiDBLite consensus disorder prediction 1 27 - -
Vian2g03247 799 MobiDBLite consensus disorder prediction 781 799 - -
Vian2g03247 799 PANTHER RNA-BINDING PROTEIN RELATED 31 637 IPR045071 -
Vian2g03247 799 MobiDBLite consensus disorder prediction 778 799 - -
Vian2g03247 799 MobiDBLite consensus disorder prediction 616 645 - -
Vian2g03247 799 SMART kh_6 174 267 IPR004087 GO:0003676
Vian2g03247 799 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 179 270 IPR036612 GO:0003723
Vian2g03247 799 MobiDBLite consensus disorder prediction 616 668 - -
Vian2g03247 799 Gene3D K Homology domain, type 1 171 294 IPR036612 GO:0003723
Vian2g03247 799 ProSiteProfiles Type-1 KH domain profile. 191 262 - -
Vian2g03247 799 MobiDBLite consensus disorder prediction 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03247 Vian-Chr2 52731444 52736089 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03247 K13095 - gmx:100777227 1194.87