Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03245 ATGGGAATGGTGGTGGCAGTGACGGTTACAGTAACGGCAATGGTAATGGAGATGGTGGGAGGAGGGAGTTGGTGCGTGGCAAAGATTGGAGTGAGCGAGGAAGTACTGCAGAGAGCATTGGACTCTGCATGTGGGGATGGCGGAGCCGATTGCGCTCCCATTCAGCCCAACCGCCTTTGCTTCTCTCCCAACACCCTTCAAGCTCACGCTTCCTACGCCTTCAACAGCTTTTACCAACGAAACGGAAGAGCTTCTAACGCCTGCCTCTTCGATGGCGCTTCCACCATCGCCCAAACAGATCCCAGCTATGGATCTTGCATGTACCCGTCCTCTGCAATCAAAACTCCAACCGCCAGGCGGAGAGAGTTTGTGCGTGTGAGAGAACCGAGACGCATGCGTGACTGA 405 0.5506 MGMVVAVTVTVTAMVMEMVGGGSWCVAKIGVSEEVLQRALDSACGDGGADCAPIQPNRLCFSPNTLQAHASYAFNSFYQRNGRASNACLFDGASTIAQTDPSYGSCMYPSSAIKTPTARRREFVRVREPRRMRD 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03245 134 Pfam X8 domain 24 94 IPR012946 -
Vian2g03245 134 SMART X8_cls 23 108 IPR012946 -
Vian2g03245 134 Gene3D - 17 122 - -
Vian2g03245 134 FunFam Glucan endo-1,3-beta-glucosidase 4 18 112 - -
Vian2g03245 134 PANTHER BETA-1,3 GLUCANASE 13 111 IPR044788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03245 Vian-Chr2 52711402 52712042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03245 15 110 Glycoside Hydrolase AT2G05790 53.125 2.65e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03245 - - var:108320750 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03245 2 52711402 52712042 Vian2g03245 2 52711402 52712042 ECH