Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03235 ATGAGCACCGTTGATAAAATGCTGATCAAGGGCATCCGGAGTTTCGACCCGGAGAACAAGAACGTCATCACCTTCTTCAAGCCCTTAACCCTAATCGTTGGTCCCAACGGTGCCGGCAAGACCACCATCATCGAGTGCTTGAAGCTTTCCTGCACCGGCGAGTTGCCTCCTAACGCCAGGTCTGGCCACAGTTTCATCCACGACCCCAAGGTCGCTGGGGAAACCGAAACCAAGGGACAGATTAAGCTCCGATTCAAGACGGCCGCCGGTAAAGACGTCGTCTGCGTCAGGTCCTTTCAGCTTACGCAAAAGGCCTCTAAAATGGAATACAAGGCTATTGAGAGTGTGATTCAAACCATTAGTCCTCATACTGGAGAGAAAGTTAGCCTCAGCTATCGATGCGCTGACATGGATAAAGAAGTTCCAGCGCTCATGGGTGTTTCCAAGGCCATTCTCGAAAATGTTATATTCGTTCACCAAGATGAAGCCAACTGGCCCCTACAGGATCCTTCCACTTTAAAGAAGAAGTTTGACGATATCTTTTCCGCAACTCGATACACCAAGGCATTGGAAGTTATAAAGAAACTTCATAAGGAGCAGGCTCAAGAGATAAAGACTTACAAGCTCAAACTCGAACATCTTCAAACTCTCAAAGATGCTGCTTATAAGCTACGGGAAAGCATTGCACACGATCAAGAGAAAACAGAGTCTGTAAAGTGTCAAGTACTGGAGTTGGAAGATAACATTAAACAATTGGAGGATAAAATTCATCATGCAGAGGAAACGTTAAAAGATTTGCGGAAGCTGCAAGAGCAGATATCAACTAAAACTGCTCAGCGAAGCACCCTGCTTAAGGAACAAGAGAAGCAACATGCTGCTCTTGTTGAGGAGAATGTAGATTCTGATGAGTTATTGATGGAATGGAAGACCAAGTTTGAAGAAAGGATTGCAATTTTAGAAGCAAAGATAAGAAAGTTGGAAAGAGAATTGAATGATGCTGCCGAGAAAGGTACTGCCCTCATGAATATCATTGGTCATACCATCAAAGAGATTGCCAAACTACAAGCGGAAGCAGAAGTTCACATGTCTTTGAAGAATGAGCGTGATTCCTCCATTCAAGATCTTTTTACGACATATAGTTTAGGGTCTCTTCCAAATTCTCCTTTCAGTGATGAGGTTGCTTTAAATCTCTTCAGGCGTGTAAAATTGAGGTTGGCAGATCTCGAGAAAGATCTGGATGATAAAAAGAAAGCAAATGACAAGGAACTTGAGATGGCATGGAAATGCTACATGAATGCTAATGACCGTTGGAAAGATACTGAGGCTAAAATAAAGGCTATGCAAGGGATCAAGGAAGGCAATCTGAAGCGCATCAAAGAGAAGAAAAACGAGCTCGATTCGTCTGAACTTCAAATGACTAATGTGAACTTATCTCACATAGATGAAAGAGAAAGAAATTTGAAAAATGAGATTGAGAGGAAGGGAAGTCAACTATCTCAGAGACAATTTGAAACCACTATACGTCAAATGCAAAATGAGATATATAGTGTAGATCAAAAGATTAAGACTGTCAATCGGGAGAAGGATATCATGACTGCTGATTCAGAGCACAGAGTTATGCTATCTCATAAGAAAGCAGAGTTGGAAAATCGGAAAAAGAAACATAAAAAAATATTTGATGACCTCAAGGACAAAATTAGAAAGGTGCTGAAAGGGAGGGTTCCTCTTGATAAGGACGTGAAAAAGGATATTACTGAAGCATTAAGGGCTGTTGGAGTGGAATTTGATGATGTGAAAGAAAAGCACCGCGATGCTGAGAAGGAAGTCAATATGTTGCAAATAAAAATACAAGAAGTTAATTGTAACCTATCCAAACACCACAAGGATTTGGAATCAAGAAAGAGATTTATTGAATCGAAGCTTCAGTCTTTGGATCAGCAATGTTCTGGACTTGATTCTTATCTCAAAGTTTTAGAGTCTTCCAAGGAAAAAAGAGATGTACAGCGAAGCAAATATAATATTGCTGATGGCATGAGGCAGATGTTTGATCCTTTTGAAAGGGTTGCCAGAGCTCATCATGTTTGCCCTTGCTGTGAGCGGCCTTTCTCTCCAGAAGAAGAAGACAATTTTGTCAAGAAGCAAAGAGTTAAGGCAGCTAGTTCAGCTGAACATATGAAAGTTCTCGCTGTAGAATCCTCAAATGCAGAGTCTCATTTTCAGCAGCTGGACAAGCTTAGGATGGTTTACGAAGAATATGTTAAACTTGGCAAGGAGACCATCCCTAATACTGAAAAGGAACTTCAGCAACTTAAAGATGAGATGGATGAGAAATCTCAGGCTCTTGATGATGTTTTATGTGTTTTAGCACAAGTGAAGACTGACAAGGATTTAGTTGACACATTAGTGCAACCTGTTGAAAATGCTGATCGGCTTTTCCAAGACATTCAAGATTTGAAAAAACAAGTTGAGGATTTAGAAGATGAGCTTAATTTTCGAGGACAGGGAGTGAGGACTCTCGAAGAGATTCAACTGGAGCTTAACACCCTGCAGAGCACCAAGGACAATTTGCAATCTGAATTGGAGAGGCTGAGGGAAGAACAAAGGCATAGGGAGAAAGATCTATCAAATATTCGTATTCGGTGGCTCAATCTAAAGGAGGAGAAATTGAAAGCAACCAACGTATTACAAAGTGTTAGCAGATTAGAAGAAGAATTGGAACGTTTAACTGAAGAAAATACTCAAGTTGATCTTGATGAGAAGCATTTGGCAGATGATCTCGGATCTTTTTCCAGTGAGAAAGATAAATTACTGACTAACCATAATGATATGAAAATTAGACTCAACCGTGAGTACGAGGACCTGGCTGAGCAAAAGAGAAGTTATCAGCAAGAAGCTGAATCACTTTTCAGAATGAATTCTAAGATCAAAGAGTATTCCGATTTAAGGAAAGGAGATAGGTTGAAGGAACTGCAGGAAAAGCATTCTCTATCACAATCTCAACTTCAAAGTTGTGATGCCAGGAAGCAGGAAATTTTAGCTGAGTTAGTCAAAAGTAAAGATTTGATGCAAAATCAAGATCAGTTAAGAAGAAAAATTGATGACAACTTAAATTATAGGAAAACTAAGGCTGAAGTAGATGAGCTAGGACATGAAATTGAAACACTAGAAGAAAATATATTAAAGGCTGGTGGGATCTCTACAATTGAAACTGAACGCCAGAAACTATCACAGGAGAGGGAGAGACTTCTTTCAGAGGTAAACCGGTGCCGTGGAACAATGTCTGTTTACCAAAGCAATATTTCCAAAAATAAGGTTGATCTTAAGCAGACTCAATACAAGGACATAGATAAGCGATACTTCGACCAGCTTATCCTGCTTAAGACAACTGAAATGGCCAACAAGGATCTGGACAGATACTACAATGCACTTGATAAGGCACTGATGCGCTTCCACACAATGAAAATGGAAGAGATCAACAAAATTATTAGGGAGTTGTGGCAGCAAACCTATAGAGGGCAAGACATTGACTACATCAGTATTCATTCAGACTCCGAAGGTGCAGGGACCCGTTCCTACAGTTACAAGGTTGTTATGCAGACTGGTGATGCAGAGTTGGAGATGAGAGGAAGATGTAGTGCTGGTCAAAAGGTTCTGGCGTCTCTTATCATACGTTTAGCGCTGGCTGAAACGTTTTGTCTCAATTGTGGAATACTTGCGCTGGATGAACCTACCACAAATTTGGATGGACCAAATGCTGAAAGTCTGGCTGCAGCTCTTGTAAGGATCATGGAGGACAGGAAAGGACAGGAAAATTTTCAGTTAATTGTAATCACTCATGATGAGCGTTTTGCTCAACTGATTGGTCAGCGCCAGCATGCAGAGAGATATTATCGTGTCTCCAAAGATGATCTTCAGCACAGTATAATCGAAAGTCAGGAGATATTTGACTGA 3951 0.4072 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVIQTISPHTGEKVSLSYRCADMDKEVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKEQAQEIKTYKLKLEHLQTLKDAAYKLRESIAHDQEKTESVKCQVLELEDNIKQLEDKIHHAEETLKDLRKLQEQISTKTAQRSTLLKEQEKQHAALVEENVDSDELLMEWKTKFEERIAILEAKIRKLERELNDAAEKGTALMNIIGHTIKEIAKLQAEAEVHMSLKNERDSSIQDLFTTYSLGSLPNSPFSDEVALNLFRRVKLRLADLEKDLDDKKKANDKELEMAWKCYMNANDRWKDTEAKIKAMQGIKEGNLKRIKEKKNELDSSELQMTNVNLSHIDERERNLKNEIERKGSQLSQRQFETTIRQMQNEIYSVDQKIKTVNREKDIMTADSEHRVMLSHKKAELENRKKKHKKIFDDLKDKIRKVLKGRVPLDKDVKKDITEALRAVGVEFDDVKEKHRDAEKEVNMLQIKIQEVNCNLSKHHKDLESRKRFIESKLQSLDQQCSGLDSYLKVLESSKEKRDVQRSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSPEEEDNFVKKQRVKAASSAEHMKVLAVESSNAESHFQQLDKLRMVYEEYVKLGKETIPNTEKELQQLKDEMDEKSQALDDVLCVLAQVKTDKDLVDTLVQPVENADRLFQDIQDLKKQVEDLEDELNFRGQGVRTLEEIQLELNTLQSTKDNLQSELERLREEQRHREKDLSNIRIRWLNLKEEKLKATNVLQSVSRLEEELERLTEENTQVDLDEKHLADDLGSFSSEKDKLLTNHNDMKIRLNREYEDLAEQKRSYQQEAESLFRMNSKIKEYSDLRKGDRLKELQEKHSLSQSQLQSCDARKQEILAELVKSKDLMQNQDQLRRKIDDNLNYRKTKAEVDELGHEIETLEENILKAGGISTIETERQKLSQERERLLSEVNRCRGTMSVYQSNISKNKVDLKQTQYKDIDKRYFDQLILLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVVMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALVRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVSKDDLQHSIIESQEIFD 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03235 1316 Coils Coil 309 343 - -
Vian2g03235 1316 Coils Coil 884 918 - -
Vian2g03235 1316 Coils Coil 1038 1058 - -
Vian2g03235 1316 Coils Coil 595 622 - -
Vian2g03235 1316 Coils Coil 398 425 - -
Vian2g03235 1316 Coils Coil 937 971 - -
Vian2g03235 1316 Gene3D - 1064 1315 IPR027417 -
Vian2g03235 1316 Coils Coil 808 835 - -
Vian2g03235 1316 Coils Coil 458 478 - -
Vian2g03235 1316 NCBIfam rad50 3 1309 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Vian2g03235 1316 Coils Coil 839 873 - -
Vian2g03235 1316 Coils Coil 545 565 - -
Vian2g03235 1316 FunFam Os02g0497500 protein 1118 1315 - -
Vian2g03235 1316 Coils Coil 627 647 - -
Vian2g03235 1316 Coils Coil 753 787 - -
Vian2g03235 1316 Coils Coil 197 217 - -
Vian2g03235 1316 ProSiteProfiles Rad50 zinc-hook domain profile. 648 747 IPR013134 -
Vian2g03235 1316 PANTHER RAD50 1 1314 - -
Vian2g03235 1316 Pfam AAA ATPase domain 26 356 IPR041685 -
Vian2g03235 1316 Coils Coil 507 527 - -
Vian2g03235 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1286 IPR027417 -
Vian2g03235 1316 Coils Coil 1065 1092 - -
Vian2g03235 1316 Gene3D - 4 289 IPR027417 -
Vian2g03235 1316 FunFam DNA repair protein RAD50 3 301 - -
Vian2g03235 1316 Pfam Rad50 zinc hook motif 688 724 IPR013134 -
Vian2g03235 1316 Coils Coil 235 286 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03235 K10866 - gmx:100818545 2125.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03235 2 52625866 52635013 Vian2g03235 2 52625866 52635013 ECH