Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03233 ATGGAAGCAGTGAGTGCCTGGGGTAACACGCCGTTGGCGACGGTGGATCCAGAAATCCACGATCTCATTGAGAAGGAGAAGCGTCGCCAGTGTCGGGGAATAGAGCTTATAGCGTCGGAGAACTTCACTTCCTTCGCTGTCATAGAGGCGCTGGGGAGTGCCCTTACCAACAAGTACTCCGAGGGTATGCCTGGCAACCGCTACTACGGTGGCAACGAGTTCATCGATCAGATTGAGAACCTGTGCCGTTCTCGCGCCCTCGAGGCCTTCCATCTCGATCCCTCCCGATGGGGCGTCAACGTCCAACCCTACTCCGGTTCTCCGGCCAACTTTGCCGCCTACACTGCCGTGCTCCAGCCCCACGACCGCATCATGGGTTTGGATCTCCCCTCCGGCGGCCACCTCACCCACGGCTACTACACCTCCGGTGGGAAGAAGATCTCTGCCACCTCCATTTACTTTGAGAGTTTGCCTTACAAGGTGAATTCCACCACCGGATTCATCGACTACGATAGGTTGGAGGAGAAAGCCTTGGATTTCCGGCCCAAGCTGATCATCTGTGGTGGCAGTGCCTACCCCAGGGACTGGGACTATGCCAGGTTCAGACAGGTAGCCGACAAGTGCGGTGCTCTCTTGCTTTGTGACATGGCTCACATCAGTGGTCTTGTTGCTGCTCAGGAAGCTAACAATCCATTCGAGTACTGTGACATTGTGACCACGACGACCCACAAGAGCTTGAGGGGTCCTAGGGCCGGTATGATCTTCTACCGGAAGGGACCTAAACCGCCGAAGAAAGGGCAAGCCGAGAATGCAGTGTACGATTTTGAAGACAAAATAAACTTTGCGGTGTTCCCTTCCCTCCAGGGTGGTCCTCACAATCACCAGATTGGGGCACTTGCGGTTGCATTGAAACAGGCTGTGAGCCCAGGATTCAAGGCATACGCGAAGCAGGTTAAGGCAAATGCAGTTGCACTTGGTAATTATTTGCTGAGCAAGGGATACAGTCTTGTCACCGGAGGAACTGAGAACCACCTTGTCTTGTGGGATCTCCGTCCTCTTGGCCTAACTGGCAACAAGGTAGAGAAACTTTGTGACCTCTGCAACATTACTGTCAATAAAAATGCTGTCTTTGGTGATAGCAGCGCATTGGCTCCTGGAGGAGTACGAATTGGTAACACCTTCTCTTCCAAACTTTTGAATCTAATGCGTTTAGAGTGTGCCCCAGCCATGACTTCTAGGGGGTTGGTTGAGAAGGACTTTGAACAGATCGGAGAGTTCCTTCACCGTGCAGTGGTTCTAACGCTGGAGATCCAGAAGGAGTATGGCAAGCTTTTGAAGGATTTCAACAAGGGCCTGGTGAACAATAAGGCTATCGAAGATCTCAAAGTTGATGTTGAGAAATTTTCAGCCTCCTTCGATATGCCTGGTTTCCTAGTATCTGAGTTGAAGTACAAGGACTAG 1461 0.5202 MEAVSAWGNTPLATVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIENLCRSRALEAFHLDPSRWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSTTGFIDYDRLEEKALDFRPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQAENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAVSPGFKAYAKQVKANAVALGNYLLSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGNTFSSKLLNLMRLECAPAMTSRGLVEKDFEQIGEFLHRAVVLTLEIQKEYGKLLKDFNKGLVNNKAIEDLKVDVEKFSASFDMPGFLVSELKYKD 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03233 486 Hamap Serine hydroxymethyltransferase [glyA]. 11 476 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vian2g03233 486 FunFam Serine hydroxymethyltransferase 41 316 - -
Vian2g03233 486 Gene3D Aspartate Aminotransferase, domain 1 16 475 IPR015422 GO:0003824
Vian2g03233 486 PIRSF SHMT 1 481 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vian2g03233 486 Pfam Serine hydroxymethyltransferase 13 426 IPR039429 -
Vian2g03233 486 Gene3D - 41 316 IPR015421 GO:0003824
Vian2g03233 486 SUPERFAMILY PLP-dependent transferases 4 478 IPR015424 -
Vian2g03233 486 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 9 478 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vian2g03233 486 CDD SHMT 13 431 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vian2g03233 486 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03233 Vian-Chr2 52620059 52621903 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03233 K00600 - gmx:100815417 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03233 2 52620059 52621903 Vian2g03233 2 52620059 52621903 ECH