Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03220 ATGGTGAATGCTGTGACTCACAGTCAGAATCACCTCAGAGCCCTACTTGTAAAGCTTGAGAGGGAGGATTCCGACCCTATCAACATACTCGCCCAAGATGGAGATTGGTCCAAAGACCATTTTTGGGCTGCTGTCAGGTTCCTTAAACATGCCTCAAGGTTCGCCGAAATCCTTCAGGTGTTTGACATGTGGAAGAACATTGAGAAATCTCGGATTAGTGAGTTCAACTATAACAAGATAATAGGCTTGTTATGCGAAGATGAAACGATGGAAGAGGCGTTAGCTGCATTGCAAGAGATGAAAGTTCAAGGTATGAAGCCTTGTTTGGACACTTATAATCCAATAATTCATGGATTATCCAGAGCTGGTAAGTTCAGTGATGCTTTACGGTTTTTTGATGAGATGAAAGAATCTGGCTTAGAGCCAGATTCTGAAACCTATGATGGTTTGATTGGAGCCTATGGGAAATTTCAAATGTATGATGAGATGAGTGAGTGTGTGAAAAAGATGGAGTTGGATGGATGTCCTCCCGATCATATCACTTATAATATACTTATCCAGGAGTATGCTCGAGGTGGGCTACTCCAGAGAATGGAAAAGCTATACCAGAGAATGCTTTCAAAGAGAATGAAATTGCAATCTTATACTTTTGTTGCAATGCTAAAGGCTTACACCACATTTGGGATTGTTGAAAAGATGGAAAAATTTTACAGGAAAGTCTTGAATTCAAAAACATGTGTAGAGGATGATGTGATTAGAAAAATGGCTGAAGTTTATATCAAGAACTACATGTTTTCTCGACTGGAAGACCTGGCACTAGACTTATGTTCGGCATTTGGTGAGAGTGATCTTGTTTGGTGTCTCCGACTCCTTTCTTATGCATGTCTTTTGAGTAAAAAGGGAATGGATATAGTAGTTAAAGAAATGCTAGATTCCAAGATCAATTGGAGTGTTGCTGTTGCAAATATTATCATGTTGGCTTATGTGAAAATGAAAGATTTCAGGCGTTTGAGAATTTTACTGTCTCAACTGCCAATCTACCGGGTGCGGCCTGATATTGTCACTGTTGGAATTGTAATGGATGCCAGTAGAATTGGTTTTGATGGTAGAGGAGCTTTAGAATCATGGAGAAGAATGGGCTATCTGGACAGAGTAGTAGAATTGAATACAGATTCTCTGGTCATTACTGCGTTTGGGAAAGGTCATTTTCTTAAAAGCTGTGAAGAAGTGTACTCTTCTCTTCACCCTGAGGACAGAGAAAGGAAAAAATGGACTTACGATGATCTCATTGCTTTATTGTCATGA 1305 0.3969 MVNAVTHSQNHLRALLVKLEREDSDPINILAQDGDWSKDHFWAAVRFLKHASRFAEILQVFDMWKNIEKSRISEFNYNKIIGLLCEDETMEEALAALQEMKVQGMKPCLDTYNPIIHGLSRAGKFSDALRFFDEMKESGLEPDSETYDGLIGAYGKFQMYDEMSECVKKMELDGCPPDHITYNILIQEYARGGLLQRMEKLYQRMLSKRMKLQSYTFVAMLKAYTTFGIVEKMEKFYRKVLNSKTCVEDDVIRKMAEVYIKNYMFSRLEDLALDLCSAFGESDLVWCLRLLSYACLLSKKGMDIVVKEMLDSKINWSVAVANIIMLAYVKMKDFRRLRILLSQLPIYRVRPDIVTVGIVMDASRIGFDGRGALESWRRMGYLDRVVELNTDSLVITAFGKGHFLKSCEEVYSSLHPEDRERKKWTYDDLIALLS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03220 434 PANTHER OS08G0520200 PROTEIN 6 433 - -
Vian2g03220 434 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Vian2g03220 434 Gene3D Tetratricopeptide repeat domain 29 153 IPR011990 GO:0005515
Vian2g03220 434 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Vian2g03220 434 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Vian2g03220 434 Pfam PPR repeat family 108 154 IPR002885 -
Vian2g03220 434 Pfam PPR repeat family 177 224 IPR002885 -
Vian2g03220 434 NCBIfam pentatricopeptide repeat 111 144 IPR002885 -
Vian2g03220 434 NCBIfam pentatricopeptide repeat 180 211 IPR002885 -
Vian2g03220 434 NCBIfam pentatricopeptide repeat 146 178 IPR002885 -
Vian2g03220 434 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Vian2g03220 434 Gene3D Tetratricopeptide repeat domain 154 271 IPR011990 GO:0005515
Vian2g03220 434 Gene3D Tetratricopeptide repeat domain 272 434 IPR011990 GO:0005515
Vian2g03220 434 Pfam PPR repeat 77 104 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03220 53 379 Glycosyltransferase AT1G05670 21.988 4.86e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03220 - - gmx:100808924 734.176