Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03218 ATGTCGGAGATGGCGAGCCCAGATCCCGAGGGAGTGGACGGAGTGCGCATGACGTGGAACGTGTGGCCCCGCACCAAGGTGGAATCGAGCAAGTGCGTCATCCCTCTGGCAGCCACCGTCGCCCTCATCCGCCCCCACCCTGACATCCCCCGCCTCCAGTACGCCCCTCTCCGATGCAAGACCTGCTCCTCCGCCCTCAACCCCTTCGCCCGCGTCGACTTCACTGCCAAGATCTGGATCTGCCCCTTCTGCTATCAGCGCAACCACTTCCCCCCTCAGTACCACGCCATCTCAGAAACCAACTTCCCCGGCGAACTATACCCCCAATACACCACCGTCGAGTACATCCTCCCCCTCTCCAATTCCCTCAACCCATCCCCCGTTTTCCTCTTCCTCCTCGATACCTGTCTCATCGAGGAGGAGATCCAGTTCCTCAAATCAGCGCTTCGTCGCGCGATTGGCCTACTTCCCGATAACGCACTCGTCGGCTTCGTCTCCTTCGGCACCCAGGTCCAGGTTCATGAATTGGGCTTCTCTGACATGTCCAAGGTTTATGTCTTCCGCGGCTCCAAGGAGATTCCCGCCGATCAGGTTCTCGATCAGCTAGGCCTTTCTACTCCCGGGAGAAGACCTCACAAGACCTCCCCTGGGGTCGCCGGCGCCGGTGCCGGGGGATTACCAAGTTCCGGCATCACACGCTTCTTGCTGCCTGCTTCTGAGTGTGAATATACTCTCAATGCGCTGTTAGATGAATTACAGACTGATCAGTGGCCGGTTCCGCCTGGGCGCCGCCCTGCGCGCTGCACTGGGGTTGCTTTGAATGTTGCTGCGGGGTTGCTGAGTGCTTGTACTCCTGGGACTGGCGCTAGAATCATAGCTTTGGTTGGGGGGCCGGTAGTGAAAACTGAGCTGGTGTTGGGGAGGTATTCTGCATTTATCAAATTTTATGTTAGGAGTATGCGACCGTCCGAAGGGTGCGGTTTTGCTGTGATGCTATGTGACTTGGCAGCAGTTAAGTGTCACGGGGGGTGCTTGTCTTTGAAGACACTACTCTTAAAATTGGCTTATGGTATTGTTTCAAAAGATCTGTCTGATCCAGTGCGCTCTCATAAAGATCTTGATAAAGATGCAGCACCATACTTCAAGAAAGCAGTCAAGTTTTATGAAGGTCTCGCTAAACAGCTGGTTAGCCAGGGTCATGTGTTAGACATGTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATTAAAGTTGCGGTTGAACGAACTGGTGGTCTTGTTGTCCTGGCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAACGAGTTTTTGAGGATGGGGAACAATCTCTTGGTCTTTGTTTCAAATGTGCTCACTGCCAGCTTTATTTATGTTTCAGTGGAACCCTGGAGATAAATTGCTCCAAGGAAATCAAAATTCAGGGGGTGATCGGGCCTTGCACTTCCTTGGAAAAGGTTGGATATTCTTTTGTTTCAAACTCTTATTCTGTGTTGCTTCTTAACTCTGGAGTTGGAAAAGGGCCTTCTGTTGCTGATACTGTTATAGGTGAGGGAAACACAACAGCATGGAAGATGTGTGGCCTTGACAAGAGCACATGCTTGACTGTGATGTTTGATCTTTCATCAAGTGAGCGGACAAACACCCCAGGTGCTGTCAACCCACAATTGTACCTACAGTTTCTTACAAGCTACCAGGACCCAAGTGGTCAATCAGTGCTTCGTGTCACGACAGTAACTAGAAGATGGGTAGATAGTACTGTTAGCTCTGAGGAATTGGTTCAAGGATTTGACCAAGAAACTGCAGCAGTTGTAATGGCTAGATTTGCTTCTCTAAAAATGGAGAGTGAGGAAACATTTGATGCTACACGGTGGTTGGATCGGTTTCTCATTCGCCTCTGTTCTAAGTTTGGTGACTATCGCAAGGATGATCCATCATCTTTTACATTAAACCCATCATTTTCACTTTTTCCTCAGTTTATGTTCAATCTGCGCCGCTCACAGTTTGTACAGGTCTTTAACAACAGTCCAGACGAGACTGCATATTTCCGCATGTTGTTAAACAGGGAAAATATTAGTAATGCTGCTGTTATGATTCAGCCATCACTGATAGCGTATTCATTTAATTCACTCCCCGCACCAGCATTGTTAGATGTGGCTTCCATTGCTGCAGACCGGATTTTGTTGCTAGATTCATATTTTAGTGTGGTTATTTTTCATGGGATGACAATAGCTCAATGGCGCAACTTGGGATACCAGAACCAGCCAGAACACCAGGCATTTGCACAGCTATTACGTGCTCCGCATGATGATTCCCAAATGATAATTAGAGAACGGTTCCCAGTTCCTAGATTGGTTGTGTGTGACCAACACGGTTCCCAGGCTAGATTTTTATTAGCAAAACTGAATCCCTCAGCAACGTATAATAATGCACATGAGATGTCCGCTGGTTCAGATGTAATCTTTACTGATGATGTGAGCCTTCAAGTTTTCTTTGAGCATCTGCAAAGGTTGGCTGTCCAATCTTGA 2556 0.4867 MSEMASPDPEGVDGVRMTWNVWPRTKVESSKCVIPLAATVALIRPHPDIPRLQYAPLRCKTCSSALNPFARVDFTAKIWICPFCYQRNHFPPQYHAISETNFPGELYPQYTTVEYILPLSNSLNPSPVFLFLLDTCLIEEEIQFLKSALRRAIGLLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGSKEIPADQVLDQLGLSTPGRRPHKTSPGVAGAGAGGLPSSGITRFLLPASECEYTLNALLDELQTDQWPVPPGRRPARCTGVALNVAAGLLSACTPGTGARIIALVGGPVVKTELVLGRYSAFIKFYVRSMRPSEGCGFAVMLCDLAAVKCHGGCLSLKTLLLKLAYGIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDMFASALDQVGVAEIKVAVERTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFKCAHCQLYLCFSGTLEINCSKEIKIQGVIGPCTSLEKVGYSFVSNSYSVLLLNSGVGKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSERTNTPGAVNPQLYLQFLTSYQDPSGQSVLRVTTVTRRWVDSTVSSEELVQGFDQETAAVVMARFASLKMESEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLIAYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPHDDSQMIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMSAGSDVIFTDDVSLQVFFEHLQRLAVQS 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03218 851 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 358 850 IPR037364 -
Vian2g03218 851 Pfam Sec23/Sec24 helical domain 607 703 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vian2g03218 851 SUPERFAMILY Zn-finger domain of Sec23/24 47 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vian2g03218 851 Gene3D Severin 709 813 IPR029006 -
Vian2g03218 851 Gene3D von Willebrand factor, type A domain 126 299 IPR036465 -
Vian2g03218 851 SUPERFAMILY Helical domain of Sec23/24 607 709 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vian2g03218 851 Pfam Gelsolin repeat 719 807 IPR007123 -
Vian2g03218 851 SUPERFAMILY vWA-like 339 448 IPR036465 -
Vian2g03218 851 Gene3D - 455 593 - -
Vian2g03218 851 Gene3D von Willebrand factor, type A domain 319 454 IPR036465 -
Vian2g03218 851 SUPERFAMILY vWA-like 127 298 IPR036465 -
Vian2g03218 851 Pfam Sec23/Sec24 trunk domain 126 299 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vian2g03218 851 Pfam Sec23/Sec24 trunk domain 339 447 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vian2g03218 851 Pfam Sec23/Sec24 beta-sandwich domain 469 593 IPR012990 -
Vian2g03218 851 CDD Sec23_C 699 819 IPR037550 GO:0030127|GO:0090114
Vian2g03218 851 FunFam Protein transport protein SEC23 604 721 - -
Vian2g03218 851 SUPERFAMILY beta-sandwich domain of Sec23/24 8 606 - -
Vian2g03218 851 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vian2g03218 851 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 710 850 IPR036180 -
Vian2g03218 851 Gene3D Sec23/Sec24 helical domain 604 848 - -
Vian2g03218 851 Gene3D - 53 112 - -
Vian2g03218 851 FunFam Protein transport protein SEC23 53 112 - -
Vian2g03218 851 Gene3D - 10 125 - -
Vian2g03218 851 FunFam Protein transport protein SEC23 709 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03218 Vian-Chr2 52501911 52507410 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03218 K14006 - gmx:100789860 1399.03