Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03146 ATGCAGTATTATGATCAAAAACAAGGAAAGCCTTTACCCAAGTTTGGGGATTGGGATGTGAATGATCCTGCTTCAGCTGAAGGATTCACTGTTATATTCAACAAAGCCAGAGATGAAAAGAAAATTGCCTCAGTCTCGGGACGATTCCCTTCTCAGCGAAAATACGATTCTCGAAAACGCAAGAATCAAAAAAAGAGCAAGAGTGCCTCTAACACAAAGAAAAAATGGTTTTGCTTTGGCCCTTAG 246 0.4024 MQYYDQKQGKPLPKFGDWDVNDPASAEGFTVIFNKARDEKKIASVSGRFPSQRKYDSRKRKNQKKSKSASNTKKKWFCFGP 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03146 81 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 6 78 IPR040387 -
Vian2g03146 81 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 7 41 IPR008700 -
Vian2g03146 81 MobiDBLite consensus disorder prediction 1 20 - -
Vian2g03146 81 MobiDBLite consensus disorder prediction 44 81 - -
Vian2g03146 81 MobiDBLite consensus disorder prediction 54 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03146 Vian-Chr2 51983811 51984270 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03146 - - gmx:102669045 134.035