Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03093 ATGGGTGCTGCGGGTTCCAAGCTCGAGAAAGCTCTCGGCGACCAATTCCCCGAAGGGGAACGCTACTTTGGCCTCGAGAATTTCGGCAATACTTGTTACTGCAACAGCGTTTTGCAGGCACTGTACTTCTGTGTTCCTTTTCGAGAACAACTGCTAGAGTATTATGCAAATAACAAGAGCTTGGCAGATGGTGAGGAAAATCTTTTGACTTGCTTGGCAGACTTATTTTCACAGATAAGTTCTCAGAAGAAGAAAACAGGTGTTATTGCTCCCAAACGATTTGTTCAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCTCACGAATTCTTGAACTTTTTGCTAAATGAACTTGTTGACATCCTGGTGAAAGAGGCCAAGTCTGCTGCCAAACATGATCAAGAAACATCACCACCTTCTGAAAAGGCTGCAAATGGACCTAATAATGGACTACCTAATGGTGCTAAAAAAGAGCCTTTAGTTACTTGGGTGCACAAAAATTTTCAGGGAATACTCACCAACGAAACTAGGTGCCTGCGTTGTGAAACTGTGACAGCTAGGGATGAAATATTTTTTGACTTGAGCCTTGATATTGAACAAAACAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCAACGGAGACATTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCACCTCACGTCTTGGTCATACACCTTAAGCGTTTTAAATACATTGAACAACTGGGACGCTACAAGAAGCTGTCTTACAGGGTTGTCTTCCCTCTTGAGCTGAAATTAAGCGATACTGTTGAAGATGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTTCACGTTGGGAGTGGGCCCAACCACGGGCATTATGTAAGCCTTGTTAAAAGCCACAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTTCAGACATTTTTTGGGTCATCGCAAGAGTATTCCAGCAACACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTGACAGGAACTAG 1113 0.416 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNKSLADGEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILVKEAKSAAKHDQETSPPSEKAANGPNNGLPNGAKKEPLVTWVHKNFQGILTNETRCLRCETVTARDEIFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHVLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIGSGDRN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03093 370 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 364 - -
Vian2g03093 370 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 363 - -
Vian2g03093 370 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 295 313 IPR018200 GO:0004843|GO:0006511
Vian2g03093 370 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 364 IPR028889 -
Vian2g03093 370 MobiDBLite consensus disorder prediction 136 162 - -
Vian2g03093 370 Pfam Ubiquitin carboxyl-terminal hydrolase 23 361 IPR001394 GO:0004843|GO:0016579
Vian2g03093 370 CDD Peptidase_C19G 24 362 - -
Vian2g03093 370 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Vian2g03093 370 SUPERFAMILY Cysteine proteinases 21 363 IPR038765 -
Vian2g03093 370 Gene3D Cysteine proteinases 5 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03093 Vian-Chr2 51548590 51553042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03093 24 335 Miscellaneous Gene Families AT4G31670 25.938 4.00e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03093 K11842 - gmx:100787737 722.62