Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03088 ATGTCTTCTCTTCAACTGTTGCAACTAACTCGGCATGGCCAGAGTATTCTGGCTTCAAGAAGGAAAACTTTATTACTTGCATCTGGTATCTTAATTGCTGGAGGAACAGCTGCATATATGCAATCAAGGTTTAGAGTTAGTAAACCTGATTTATTTGGACATAGCAATGGACAAAACAGCGATAGTGAAGTCACAGAGGAGGTTGGCGTTGATGCAACAAAAAATAAACACAAGAAAGGGTTGAAGTCACTCCAACTCCTTGCTTCAATTATACTAACTGACATGGGCAAATTAGGTGCAAGGGATCTTTTAGGTTTAGTTGCTATAGCGGTGTTGCGGACTGCTTTGAGCAACAGGCTTGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACGTGTACCTTTGTTTCTTCGGCTAATTTCAGAAAATATTCTTTTGTGTTTCCTTTTGTCAACCATTCATTCTACGTCAAAGTATATAACAGGGACTTTGAGTTTACATTTCAGAAGAATATTGACCAAGCTTATTCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATATCGCATGTTGATGGTCGGATAACTAACCCAGAGCAAAGAATTGCCAGTGATGTGCCAAGGTTCTGTTCAGAGTTAAGTGAAATTGTACAGGATGATCTCACAGCCGTTACTGATGGACTTCTATACACCTGGCGTTTGTGTTCATATGCTAGCCCAAAATATGTCTTCTGGATATTGGCATATGTACTCGGAGCTGGTGCTGCAATCAGAAACTTTTCTCCTTCTTTTGGAAAACTTATGTCTAAAGAACAACAATTGGAAGGAGAGTACCGACAGCTTCACTCACGATTAAGGACTCACTCAGAAAGTGTAGCATTCTATGGTGGAGAGAGGAAAGAAGAAGCCCATATTCAACAGAAGTTTAAAACCTTGGTTAGGCATGTGCATAATGTGCTACATGACCATTGGTGGTTTGGGATGATTCAAGACTTATTATTGAAGTACCTTGGTGCTACTGTTGCTGTTATTTTGATTATTGAACCTTTCTTTTCTGGTCATTTAAGGCCCGACAGCTCAACTTTAGGGCGGGCAGAGATGTTAAGCAATCTTAGATATCATACTAGTGTCATAATTTCTTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGTCTCAGTGGGTATGCTGATCGTATTTGTGAATTAATGGCTGTATCAAGGGACTTAAGTTTGGTGGATGAGAGATCTTCCCTTCAAAGGAAAGCAAGTAGAAATTGCATAAGTGAAGCTAACTACATTGAATTTGATGGTGTGAAGGTTGTGACCCCCACTGGTAATGTCTTGGTGGACGATCTGACTCTTAGGGTTGAATCAGGATCAAATCTTTTGATTACAGGTCCAAATGGCAGTGGCAAAAGCTCTCTTTTCCGGGTTCTAGGTGGCCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCTTAATAAGGAGATTTTCTATGTTCCCCAAAGGCCATACACTGCTGTAGGAACACTACGAGATCAGTTGATTTATCCTATTACAGCAGATCAAGAGATTGAACCACTCACAGACGGCGGGATGGTGGAGCTGTTAAAAAATGTTGACCTCGAATATCTGTTGGATCGTTACCCTCCTGAAAAGGAGGTAAACTGGGGTGAGGAACTTTCATTGGGTGAGCAACAGAGATTGGGCATGGCAAGGCTTTTCTACCACAAGCCTAAATTTGCTATTCTAGATGAGTGCACAAGTGCTGTGACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTTAGGGCAATGGGAACATCATGCATTACCATATCACATCGTCCGGCATTGGTTGCATTTCATGATGTGGTCTTGTCCTTAGATGGTGAAGGAGGATGGAGTGTACACTATAAAAGGGAGGGCTCTCCTACTGAAATGGAGATTGATACAATGAAGGCATTAGAAACAAAACGACAGAGTGATGCAAAGGCAGTTCAACGTGCATTTTCCATGAGTAAAAAGGATTCTGCATTCTCAAATCCGAAGGCACAGTCGTATTTTTCAGAGGTGATATCATCATCTCCTTCTATGAATCATACAATTTCACCTTCTGTTGTTCCCCAACTCCGATGTAATGCAAGGGTATTGCCATTGAGAGTAGCTGCCATGTGCAAAGTATTGGTACCCACTATACTGGATAAACAAGGTGCACAACTGCTTGCTGTCGCATTTCTTGTTGTTTCAAGAACATGGGTCTCAGATCGTATTGCATCACTAAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTGTTCTTCAAAGTGCTGCATCTGCTTTCATTGCTCCATCTATAAGGCACTTGACAGCTAGACTAGCACTGGGGTGGCGAATTCGTTTGACACAACATCTGTTAGAAAACTACTTGAGAAACAACGCATTCTACAAGGTCTTTCACATGGCAAGCAAAAATATTGACGCGGATCAGAGGATAACTCAAGACTTGGAGAAGTTGACATCAGACTTGTCTGGATTGGTCACTGGATTGGTAAAGCCATCTGTGGATATTTTGTGGTTCACGTGGAGAATGAAGTTGTTAACAGGTCAGAGGGGGGTTGCCATACTCTATGTCTACATGCTACTTGGTCTTGGATTTCTAAGAACTGTTACTCCTGATTTTGGTGATTTGATAAGCCAAGAGCAACAACTTGAAGGAATGTTTAGGTTCATGCATGAAAGGCTCTGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGAGCTCGAGAAAAAGCTATGGTTGAATCAAGATTTAGGGAGCTTCTCTCCCACTCCAAATACCTTCTAAAAAAGAAGTGGCTATTTGGTATACTTGATGATTTTATCACAAAGCAACTCCCTCATAACGTGACTTGGTTGCTGAGCTTATTATATGCTATGGAACATAAGGGAGACCGAGCTTCGATAAATACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGCGACATTCTTGAATTGAACAGAAAGTTTGTAGAGCTTTCTGGTGGTATTAATAGGATTTTTGAGCTTGAAGAACTTCTGGATGCAGCACAGTCTGGCGACTCTATCAACGGAAGTATTACATTTCCAATGAGGGATTATCATGCCAAAGATGCTATTTCCTTTTCTAAGGTTGATATTGTAACCCCTTCCCAGAAGATTTTGGCCAGAGAGTTGACATGGGACATTGAGCTTGATAGAAGCCTACTTGTTACTGGTCCAAATGGAAGTGGGAAAAGTTCCATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGCGAGTGGAAGACTCTCTAGACCATCTGATGATGCGGATCTAGAGGCTGGATCAGGTTCTGGCATCTTTTATGTTCCTCAGCGGCCTTACACTTGCTTGGGAACATTGCGGGATCAAATCATATACCCACTGTCCCGTGAGGAAGCAGAGTTAAGAGCATTGAAGATGTACGGAAAAGGTGAGAACCATGACCCTAGAAATTTGTTGGACAAACACGTGCAAGTTATCCTAGAGAATGTTCGGTTGAATTATCTTCTAGAAAGAGACAGTAGAGGCTGGGATGCAAATCTAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGGTTAGGCATGGCACGGTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAATGCAACTAGCGTTGATGTCGAGGAACACTTATATGGGTTAGCGAAAAATATGGGAATCACAGTTGTTACTTCCTCACAACGTCCCGCTTTAATTCCATATCATTCCATGGAATTGCGTCTGATTGATGGTGAGGGTAATTGGGAACTTCGTTCGATCAAGCAATGA 3999 0.4161 MSSLQLLQLTRHGQSILASRRKTLLLASGILIAGGTAAYMQSRFRVSKPDLFGHSNGQNSDSEVTEEVGVDATKNKHKKGLKSLQLLASIILTDMGKLGARDLLGLVAIAVLRTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFRRILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESVAFYGGERKEEAHIQQKFKTLVRHVHNVLHDHWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRICELMAVSRDLSLVDERSSLQRKASRNCISEANYIEFDGVKVVTPTGNVLVDDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPITADQEIEPLTDGGMVELLKNVDLEYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREGSPTEMEIDTMKALETKRQSDAKAVQRAFSMSKKDSAFSNPKAQSYFSEVISSSPSMNHTISPSVVPQLRCNARVLPLRVAAMCKVLVPTILDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSAASAFIAPSIRHLTARLALGWRIRLTQHLLENYLRNNAFYKVFHMASKNIDADQRITQDLEKLTSDLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYVYMLLGLGFLRTVTPDFGDLISQEQQLEGMFRFMHERLCTHAESVAFFGGGAREKAMVESRFRELLSHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASINTQGELAHALRFLASVVSQSFLAFGDILELNRKFVELSGGINRIFELEELLDAAQSGDSINGSITFPMRDYHAKDAISFSKVDIVTPSQKILARELTWDIELDRSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSDDADLEAGSGSGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKMYGKGENHDPRNLLDKHVQVILENVRLNYLLERDSRGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKNMGITVVTSSQRPALIPYHSMELRLIDGEGNWELRSIKQ 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03088 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 147 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g03088 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 443 672 IPR003439 GO:0005524
Vian2g03088 1332 SUPERFAMILY ABC transporter transmembrane region 115 413 IPR036640 GO:0005524|GO:0016020
Vian2g03088 1332 Pfam ABC transporter transmembrane region 2 742 1007 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g03088 1332 Pfam ABC transporter transmembrane region 2 88 355 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g03088 1332 Gene3D ABC transporter type 1, transmembrane domain 97 418 IPR036640 GO:0005524|GO:0016020
Vian2g03088 1332 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 707 1328 - -
Vian2g03088 1332 Pfam ABC transporter 460 605 IPR003439 GO:0005524
Vian2g03088 1332 CDD ABCD_peroxisomal_ALDP 443 651 - -
Vian2g03088 1332 ProSitePatterns ABC transporters family signature. 1250 1264 IPR017871 GO:0005524|GO:0016887
Vian2g03088 1332 SUPERFAMILY ABC transporter transmembrane region 757 1064 IPR036640 GO:0005524|GO:0016020
Vian2g03088 1332 Gene3D - 1087 1324 IPR027417 -
Vian2g03088 1332 SMART AAA_5 468 647 IPR003593 GO:0016887
Vian2g03088 1332 SMART AAA_5 1120 1331 IPR003593 GO:0016887
Vian2g03088 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 647 IPR027417 -
Vian2g03088 1332 ProSitePatterns ABC transporters family signature. 577 591 IPR017871 GO:0005524|GO:0016887
Vian2g03088 1332 Gene3D - 429 704 IPR027417 -
Vian2g03088 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 754 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g03088 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1085 1321 IPR027417 -
Vian2g03088 1332 CDD ABCD_peroxisomal_ALDP 1095 1325 - -
Vian2g03088 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1095 1330 IPR003439 GO:0005524
Vian2g03088 1332 Pfam ABC transporter 1113 1278 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03088 Vian-Chr2 51476511 51499499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03088 1 1332 Acyl Lipid Metabolism Gene Families AT4G39850 76.883 0.0 2113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03088 K25819 - gmx:100813765 2430.59