Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03071 ATGCGGTGGCGGTTGCTGCTATTGTTGTTGTTGGAGCTAACGGCACGCGCAATGCCGCTTCCGGTCATGTTTTCCGCGCGCCTCGTTCACCGCTTCGCTGATGAAATCAAACCGGTTCGAATTCCGACCGGCGACTGGCCAGACCGGAAGAGCTTGCGCTACTACCAGATGCTTCTCGCCGACGACATTCTCAGACGCAAGATCAAACTCGGAGGCGCTCGCTACCAGCTTCTGTTTCCTACTCACGGTAGCAAAACATTGTCGCTCGGCAACGACTTCGGCTGGTTACATTACACGTGGATTGATATAGGAACACCGAGTACTTCGTTTCTTGTGGCGTTGGACGCTGGCAGTGATCTTCTTTGGATTCCGTGTGACTGCGTACAGTGTGCTCCATTGTCATCTAGTTACTATTCCAATCTGGATAGAGATCTGAATGAATATAGTCCGTCTCGATCGTTATCCAGTAAGCATCTATCTTGCAGTAATCACTGGTGTGATAATGGTTCGAATTGTAAAAGTTCCCAGCAGCAGTGTCCGTACATGGTCAGTTACTTGTCAGATAATACATCGAGTTCTGGATTGTTAGTTGAGGACATACTGCATCTTCAGTCTGGTGGCGGTTTATCAAACTCCTCTATTCAGGCTCCAGTTGTTCTTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCCCCCGATGGTCTATTAGGTTTGGGACCTGGGGAGAGTTCTGTTCCAAGTTTTCTTGCCAACTCAGGATTAATCCACAATTCCTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATGTTTTTTGGGGACCAAGGACCAACCATCCAACAGTCTACCCCGTTCTTGCCTTTGGATGGATTATATTCAACATACATTGTTGGAGTGGATTCATCTTGTGTTGGGAATACTTGTCTTAAAATGACAAGTTTTAAAGCACAGATTGATAGCGGAACGTCTTTTACATTTCTTCCTGGCCATGCTTATGGAGTAATAGCCGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGCTATGTACCCAGTTCACAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCGTGTTCCAACAGAATAACAGTTTTGTGGTCTATAATCCCGTGTTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATCCAGCCAACAGAAGGGGATATGGGAACAATTGGACAGAACTTCATGATTGGATACCGTTTGGTATTTGATCGGGAAAACAAGAAGCTAGCGTGGTCACGCTCAAATTGTCAGGATTTGAGTGTAGGTAAGAGGATGCCCCTTTCTCCAAATGAGACTTCACCAAACCCATTGCCTTCAGATGAGCAACAAAGAACGAACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAATCTTCAGCAGCTTTATCTCGGATGAATTCATCGTTCCGGGTATATTGGCATTGCTATTTCTTTCTTCTATTTCAACTCGTGTCTGCCTCTTACTGA 1566 0.4566 MRWRLLLLLLLELTARAMPLPVMFSARLVHRFADEIKPVRIPTGDWPDRKSLRYYQMLLADDILRRKIKLGGARYQLLFPTHGSKTLSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWIPCDCVQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSNHWCDNGSNCKSSQQQCPYMVSYLSDNTSSSGLLVEDILHLQSGGGLSNSSIQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLANSGLIHNSFSLCFNEDDSGRMFFGDQGPTIQQSTPFLPLDGLYSTYIVGVDSSCVGNTCLKMTSFKAQIDSGTSFTFLPGHAYGVIAEEFDQQVNGSRSSFEGSPWEYCYVPSSQELPKVPSLTLVFQQNNSFVVYNPVFVFYGNEGVIGFCLAIQPTEGDMGTIGQNFMIGYRLVFDRENKKLAWSRSNCQDLSVGKRMPLSPNETSPNPLPSDEQQRTNGHAVAPAVAGRAPHKSSAALSRMNSSFRVYWHCYFFLLFQLVSASY 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03071 521 SUPERFAMILY Acid proteases 91 446 IPR021109 -
Vian2g03071 521 Gene3D Acid Proteases 84 279 IPR021109 -
Vian2g03071 521 ProSiteProfiles Peptidase family A1 domain profile. 97 441 IPR033121 -
Vian2g03071 521 MobiDBLite consensus disorder prediction 449 475 - -
Vian2g03071 521 FunFam Aspartyl protease family protein 1 83 279 - -
Vian2g03071 521 PRINTS Pepsin (A1) aspartic protease family signature 321 332 IPR001461 GO:0004190|GO:0006508
Vian2g03071 521 PRINTS Pepsin (A1) aspartic protease family signature 103 123 IPR001461 GO:0004190|GO:0006508
Vian2g03071 521 PRINTS Pepsin (A1) aspartic protease family signature 417 432 IPR001461 GO:0004190|GO:0006508
Vian2g03071 521 MobiDBLite consensus disorder prediction 449 485 - -
Vian2g03071 521 Pfam Xylanase inhibitor C-terminal 319 441 IPR032799 -
Vian2g03071 521 Gene3D Acid Proteases 282 447 IPR021109 -
Vian2g03071 521 FunFam Aspartyl protease family protein 1 282 447 - -
Vian2g03071 521 Pfam Xylanase inhibitor N-terminal 98 279 IPR032861 -
Vian2g03071 521 PANTHER ASPARTYL PROTEASES 26 438 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03071 Vian-Chr2 51300963 51304957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03071 90 448 Miscellaneous Gene Families AT1G44130 28.906 4.23e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03071 - - gmx:100782209 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03071 2 51300963 51304957 Vian2g03071 2 51300963 51304957 ECH