Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03069 ATGTCGCCAAAATATCAGACTCCGCCAAAATATCAGACTCTGGACAATCGTCCAGTTAATCAGTGGAAGGTTACGGAGCTGAGAGAGGAGCTGAGGAGGAGGAGGTTAAACACCAAAGGTCTGAAGGATGATTTGGTAAAGCGGTTGGATGAATGTCTTCGTCTTGAAAGGGAGGGTGAGCAGGATTCTGAGAAGGAGGAGGCCAATGGTTTTGATGATGTTCATGTAGACGGGGAAAAAGGTTCTGCGGCTGTTACTATGGATGCTGAAGTCGTTGACGCAACTGACAAGGAAAGTACCCAAACATTTGAGACTGCTGAAAAGGGGAAGAGTGATGTAGTTGAACCGATCGAAACAGAAAATGAGGAAATGTTTCCGGGGGTTGTGGATGAAGACAGCAATAAGAATGACAAGCAGGATGATATTACTGGCCAAGTTGACATTAATAATAGTGTGTCAACCATGGATGAAGAAGTTGAACACGAGGGCTTTCCCTCCGGTGTATATTCTGGAAATGTGGTAGAGGAGGTGGCTAGTACTCATGCTTCGGCTGTAGAGACGACAATTACAGTTACTGAAAGTGTAGTAACAGGTTTGGTAGTCAGTGGTGAGGATTCATACTGTGCAGAAAAGAACAATGAGTTTTCTGCAGCAAAGCTAGAGAATGAGGAGTCAAAGGCGCAGCTGGATGGTGAGGATACAAAGCCCCAACTGGATTCTGAGACAAAGCCCCTGCACGAGGATATTGTGCCCGACTCTTCTGTTCCCGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAAGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTCTTATGATGTACCTGTTGGAGGGCGGCATGAGAAAAAGACATCTGTTGAAGAAAATATCAATAATGTTTCAAGTCCAGACTTGAATAAGACCAATAGCAGTGATGATGTGGGGTATCCAGAAAAGTTGAATTTAGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCCTGAGACTAAGCAAATTGATTCTAAGTTTAATGTTGATGAACTTAGAAAGAAAGTGGAGAGTATTGAAGAGCCTATTGTGAAGGAGGAAAGTAGGACTATAGCTGTGGGAGATGGTGTATCTGGAGGAAAAAATGATACCCACCAAGATATTGACATTAGTCCCGTTGCCCCAACTGAGAAACGAAAATTCCATGAACAAACATCGGTTGGGAACAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGAAACAGTTAAAAGTCCAGATTCACAAAGCACTACTCCCAGGCCTGCTACTACACCTAGAGAAGAGCCAATTCCTCAGAAACGCAACCTCTCTAGGTCTGATTCCTCTGCTACTGATGACACACCTAAAGAGCGCATTGTTCCACCATCACCAAGGTCCCCAACTAATTCCCTCAGGATTGATCGATTCCTCCGTCCATTTACTCTGAAAGCTGTACAAGAACTTCTTGGTAAGACTGGGAATGTTAGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTTACTTACTCATCTGTTGAAGAAGCCATGGAGACACGGAATGCTGTGTATAATTTGCAATGGCCACCAAATGGTGGGCGTCTCTTAGTTGCTGAGTATGTTGATCCGGAAGAAGTGAAAATGAAGTTAGAATCTCCTGTACAGACTGCCCCCATCAGCACTGCTCCAGTAGTTCCGCCTGTGGTCCCAACATCACAGCCAGAGCCTTCCCCTCGGCTGCACAGGGAGCAGCATTCAGTTCCAACTATGCTCCCACCTCCACCACCATTGTCAAAAAACCCACCAGTAGCAAGAGATCGACTTCCATCACCACCACCTCTTCCAGAGAAAGTTGACCCACCTATTGTCACTCTTGATGATCTCTTCCGCAAAACCATATCAACTCCTCGGATCTACTACTTGCCTTTGTCCGAAGAGCAAGTTGCTGCAAAACTTGCTGCACAGGGTAAAAGTGTGAGGCAGTAG 2139 0.4441 MSPKYQTPPKYQTLDNRPVNQWKVTELREELRRRRLNTKGLKDDLVKRLDECLRLEREGEQDSEKEEANGFDDVHVDGEKGSAAVTMDAEVVDATDKESTQTFETAEKGKSDVVEPIETENEEMFPGVVDEDSNKNDKQDDITGQVDINNSVSTMDEEVEHEGFPSGVYSGNVVEEVASTHASAVETTITVTESVVTGLVVSGEDSYCAEKNNEFSAAKLENEESKAQLDGEDTKPQLDSETKPLHEDIVPDSSVPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTIITDNVKLEQDIVKPEMVEEPSSRNDVPVSYDVPVGGRHEKKTSVEENINNVSSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETKQIDSKFNVDELRKKVESIEEPIVKEESRTIAVGDGVSGGKNDTHQDIDISPVAPTEKRKFHEQTSVGNNEPAKRQRRWNTETVKSPDSQSTTPRPATTPREEPIPQKRNLSRSDSSATDDTPKERIVPPSPRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVTYSSVEEAMETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLESPVQTAPISTAPVVPPVVPTSQPEPSPRLHREQHSVPTMLPPPPPLSKNPPVARDRLPSPPPLPEKVDPPIVTLDDLFRKTISTPRIYYLPLSEEQVAAKLAAQGKSVRQ 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03069 712 MobiDBLite consensus disorder prediction 56 79 - -
Vian2g03069 712 MobiDBLite consensus disorder prediction 465 480 - -
Vian2g03069 712 MobiDBLite consensus disorder prediction 488 504 - -
Vian2g03069 712 CDD RRM_ACINU 518 603 IPR034257 -
Vian2g03069 712 MobiDBLite consensus disorder prediction 361 410 - -
Vian2g03069 712 Pfam RNSP1-SAP18 binding (RSB) motif 668 709 IPR032552 -
Vian2g03069 712 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 10 711 - -
Vian2g03069 712 MobiDBLite consensus disorder prediction 639 670 - -
Vian2g03069 712 MobiDBLite consensus disorder prediction 219 286 - -
Vian2g03069 712 SUPERFAMILY SAP domain 19 56 IPR036361 -
Vian2g03069 712 ProSiteProfiles SAP motif profile. 19 53 IPR003034 -
Vian2g03069 712 MobiDBLite consensus disorder prediction 56 145 - -
Vian2g03069 712 MobiDBLite consensus disorder prediction 305 521 - -
Vian2g03069 712 MobiDBLite consensus disorder prediction 254 286 - -
Vian2g03069 712 MobiDBLite consensus disorder prediction 128 142 - -
Vian2g03069 712 SUPERFAMILY RNA-binding domain, RBD 512 600 IPR035979 GO:0003676
Vian2g03069 712 MobiDBLite consensus disorder prediction 91 117 - -
Vian2g03069 712 MobiDBLite consensus disorder prediction 339 359 - -
Vian2g03069 712 MobiDBLite consensus disorder prediction 611 672 - -
Vian2g03069 712 Gene3D SAP domain 19 69 IPR036361 -
Vian2g03069 712 Coils Coil 208 228 - -
Vian2g03069 712 MobiDBLite consensus disorder prediction 219 250 - -
Vian2g03069 712 Pfam SAP domain 20 50 IPR003034 -
Vian2g03069 712 SMART sap_9 19 53 IPR003034 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03069 K12875 - gmx:100786288 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03069 2 51279934 51282760 Vian2g03069 2 51279934 51282760 ECH