LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g03061	ATGGCAAGTTTTGCAGCTGTGTTGTTGTGGCATGTCATTGCCTTGCTGGTTGTGGCGAATTTGGGGTATGCTTCAAACCTTGATGCCCAAAAACTCAACGCAGAGGTTATCTATGCCCGCAATGGAGCTGTTGCCACTGATGACCGTCGTTGCTCAAGGATCGGCAAGGATATTCTCAGAGAAGGAGGGCATGCTGCGGACGCTGCAGTGGCTGCTGCCCTTTGTTTGGGGGTTGTCAGTCCTGCCTCCAGTGGCCTTGGCGGAGGAGCCTTTATGCTTCTCAGGCAGGCTAATGGGGTGTCCAAGGCCATTGATATGAGAGAAACTGCTCCTTCTCTTGCTTCTAAGGATATGTATGGTGGAAATACTACTTTGAAGGCCAAAGGTGGCCTCTCTGTAGCAGTTCCTGGAGAACTTGCTGGTCTTCACGTGGCGTGGAAACAATATGGGAAACTTCCATGGAAAAGGCTTGTAAATCCAGCTGAGAAACTAGCGCGTGGGTTTAAAATATCGGCATACCTGCACATGCAGATGAAGGCAACAGAGTCAGATATATTGCAAGACAAGGGTCTTCGTAGCATATTTGCACCAAATGGAAAACTCTTGAACATAGGTGACATATGCTACAATAAGAAGCTAGCCGACACTCTCAGAGCGATATCTGTGTTTGGTCCGAAAGCCTTCTATGATGGATGGATTGGTCATAATTTAGTTAAGGATGTTCAGAATGCTGGAGGGATATTGACTACGAAAGACCTCAAAAATTACACTGTTAAACAGAAGAAGCCTTTATCTACAAATGTTCTTGGACTAAATGTCCTTGCCATGCCTCCTCCATCAGGTGGACCTCCAATGATACTACTGCTGAACATTCTAGATCAATATAACATCCCTTCTGGCATTTCTGGTGCCCTAGGGGTCCATCGTGAAATTGAAGCTCTGAAACATGTATTTGCCGTGAGAATGAATCTTGGTGATCCTGATTTTGTGAATATTACAGAGGTTGTTTCTGATATGCTTTCTCGTAGGTTTGCTAAAGTGTTGAAAAATGACATCAATGATAATAAGACTTTTGACCCCAGTCATTACGGTGGCAAGTGGAATCAAATTCATGATCATGGTACAAGTCATTTATGTGTAATAGATCTTGAGAGAAATGCCATTTCCATGACTACTACTGTAAATTCATATTTTGGTTCAAAGATCCTTTCACCAAGTACTGGAATAGTACTGAACAATGAGATGGATGATTTTTCCATGCCTAGAAATGTTTCCAAGGATACCCCACCTCCAGCTCCTGCCAATTTCATCGTGCCAGGAAAGCGGCCATTATCATCCATGTCACCAACTATTGCCCTCAAGAATGGGAAGCTAAAAGCTGTAGTAGGTGCAAGTGGAGGTGCTTACATTATTGGTGGAACTTCAGAGGTTCTTTTGAATCACTTTGGTAAAGGACTGGATCCTTTTTCTTCTGTAACGGCTCCAAGGGTCTATCATCAGCTAATTCCTAATGTGGTTAACTATGAGAATTGGACAACTGTGAGCGGTGACCACTTTGAACTTAGCGCTGATATCAGGAATGTCCTTAGAAGTAAGGGTCATGTCCTACAGGGCCTTGCCGGTGGGACTATTTGTCAATTTATTGTTATAGACGATTTTGTGTCATCAAGAAAAACTAAAGTGAATGGAAATGAAAGGCTTGTGGCAGTGAGTGATCCAAGAAAGGGTGGTCTTCCTGCAGGCTTTTGA	1749	0.4374	MASFAAVLLWHVIALLVVANLGYASNLDAQKLNAEVIYARNGAVATDDRRCSRIGKDILREGGHAADAAVAAALCLGVVSPASSGLGGGAFMLLRQANGVSKAIDMRETAPSLASKDMYGGNTTLKAKGGLSVAVPGELAGLHVAWKQYGKLPWKRLVNPAEKLARGFKISAYLHMQMKATESDILQDKGLRSIFAPNGKLLNIGDICYNKKLADTLRAISVFGPKAFYDGWIGHNLVKDVQNAGGILTTKDLKNYTVKQKKPLSTNVLGLNVLAMPPPSGGPPMILLLNILDQYNIPSGISGALGVHREIEALKHVFAVRMNLGDPDFVNITEVVSDMLSRRFAKVLKNDINDNKTFDPSHYGGKWNQIHDHGTSHLCVIDLERNAISMTTTVNSYFGSKILSPSTGIVLNNEMDDFSMPRNVSKDTPPPAPANFIVPGKRPLSSMSPTIALKNGKLKAVVGASGGAYIIGGTSEVLLNHFGKGLDPFSSVTAPRVYHQLIPNVVNYENWTTVSGDHFELSADIRNVLRSKGHVLQGLAGGTICQFIVIDDFVSSRKTKVNGNERLVAVSDPRKGGLPAGF	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g03061	582	FunFam	Gamma-glutamyltransferase 5 isoform 1	263	367	-	-
	Vian2g03061	582	SUPERFAMILY	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	35	582	IPR029055	-
	Vian2g03061	582	NCBIfam	gamma-glutamyltransferase	44	515	IPR000101	GO:0006751\|GO:0036374
	Vian2g03061	582	Gene3D	-	263	367	IPR043138	-
	Vian2g03061	582	FunFam	Glutathione hydrolase 1	370	582	-	-
	Vian2g03061	582	Pfam	Gamma-glutamyltranspeptidase	57	577	-	-
	Vian2g03061	582	PANTHER	GAMMA GLUTAMYL TRANSPEPTIDASE	26	582	IPR000101	GO:0006751\|GO:0036374
	Vian2g03061	582	PRINTS	Gamma-glutamyltranspeptidase signature	399	417	-	-
	Vian2g03061	582	PRINTS	Gamma-glutamyltranspeptidase signature	64	89	-	-
	Vian2g03061	582	PRINTS	Gamma-glutamyltranspeptidase signature	463	480	-	-
	Vian2g03061	582	PRINTS	Gamma-glutamyltranspeptidase signature	132	150	-	-
	Vian2g03061	582	PRINTS	Gamma-glutamyltranspeptidase signature	247	263	-	-
	Vian2g03061	582	PRINTS	Gamma-glutamyltranspeptidase signature	375	393	-	-
	Vian2g03061	582	PRINTS	Gamma-glutamyltranspeptidase signature	150	169	-	-
	Vian2g03061	582	PRINTS	Gamma-glutamyltranspeptidase signature	276	295	-	-
	Vian2g03061	582	PRINTS	Gamma-glutamyltranspeptidase signature	439	454	-	-
	Vian2g03061	582	Gene3D	-	370	582	IPR043137	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g03061	Vian-Chr2	51220538	51224298	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian2g03061	13	582	Miscellaneous Gene Families	AT4G39640	65.620	0.0	747

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g03061	K18592		-	gmx:100797040	945.266