Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03057 ATGTTGTGTGTCAACACCGCCTTCACTTCTTTCATACCCAGAAAACCAACTTGTGTTTTTCCCTCCAAATCAACCACCCCAATTTCCTGCACCCTCCAAGGAACCGTTGCTGAACCAAAATCTACAGCTGCTGCTGAACCGCTTTTGCTTAATGCAGTTCGTGGGGTAGAGGTTGAAAGACCACCGGTTTGGCTCATGAGGCAAGCAGGGAGATCTGAAAATGTCGATCTTGTGGTGGAAATTTCCCTGCAACCATGGCATGTTTTCAAGCCTGATGGAGTGATTTTATTCTCAGACATTCTTACCCCACTTTCTGGAATGAATATACCCTTTGATATTGTGAAGGGTAAGGGTCCTGTTATATTTGATCCTATTCACACAGATGCCCAGGTCAATCAAGTGAGAGAGTTTGTTCCTGAAGAATCAGTTCCATACGTTGGTGAAGCACTGACAATATTGAGGAAAGAGGTGAATGATACAGCTGCAGTTCTTGGTTTTGTTGGGGCACCGTTCACTCTGGCATCATATGTGGTTGAAGGTGGTTCATCTAAAAACTTCTCAAAAATAAAAAGATTGGCTTTCTCTGAGTCCAAGATCCTGCACTCTTTACTGCAAAAGTTTACAACATCAATGGCAAGATACATTCAATACCAAGCTGATAATGGAGCTCAAGCTGTTCAGATCTTTGATTCATGGGCAACAGAACTTAGTCCAGTGGATTTTGAAGAATTCAGTTTGCCTTACTTGAAGCAGATTATCGATGCTGTGAAGAAAAGCCATCCAAATCTCCCTTTGATCCTGTATGCTAGTGGATCTGGGGGCTTGCTTGAAAGACTAGCCTTGACAGGAGTGGATGTAATTAGCTTGGATTGGACAGTTGATATGGCTGATGGTAGGAGGCGACTGGGACCAAATATAGCTGTCCAAGGAAATGTGGACCCTGGTGTTCTTTTTGGTTCCAAAGAGTTCATCACTGATAGGATAAATGATACTGTGAAAAAAGCAGGTAGAGGGAAACATATCTTGAATCTTGGTCATGGAATTAAAGTAGGTACGCCTGAGGAGAATGTTGCACATTTTTTTGAGGTTGCTAAATCACTCCGATACTAA 1110 0.4261 MLCVNTAFTSFIPRKPTCVFPSKSTTPISCTLQGTVAEPKSTAAAEPLLLNAVRGVEVERPPVWLMRQAGRSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPIHTDAQVNQVREFVPEESVPYVGEALTILRKEVNDTAAVLGFVGAPFTLASYVVEGGSSKNFSKIKRLAFSESKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIIDAVKKSHPNLPLILYASGSGGLLERLALTGVDVISLDWTVDMADGRRRLGPNIAVQGNVDPGVLFGSKEFITDRINDTVKKAGRGKHILNLGHGIKVGTPEENVAHFFEVAKSLRY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03057 369 CDD URO-D 50 366 IPR006361 GO:0004853|GO:0006779
Vian2g03057 369 NCBIfam uroporphyrinogen decarboxylase 73 365 IPR006361 GO:0004853|GO:0006779
Vian2g03057 369 SUPERFAMILY UROD/MetE-like 48 368 IPR038071 -
Vian2g03057 369 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 62 71 IPR000257 GO:0004853|GO:0006779
Vian2g03057 369 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 43 369 - -
Vian2g03057 369 FunFam Uroporphyrinogen decarboxylase 38 369 - -
Vian2g03057 369 Pfam Uroporphyrinogen decarboxylase (URO-D) 74 366 IPR000257 GO:0004853|GO:0006779
Vian2g03057 369 Pfam Uroporphyrinogen decarboxylase (URO-D) 48 72 IPR000257 GO:0004853|GO:0006779
Vian2g03057 369 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 164 180 IPR000257 GO:0004853|GO:0006779
Vian2g03057 369 Gene3D - 35 369 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03057 Vian-Chr2 51178383 51181430 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03057 K01599 - gmx:100817154 694.501