Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03036 ATGGAAGCTGCCAAGACCTCCATCTTCCTAGCCATCATTTTCCTTCTCTTAACTTCAGCATTGTCTTTAGCAAATGCAAAAGTTCACGCGCATGAGTTTGTTGTCGAAGCAACTCCAGTGAAGAGGCTGTGCAAAACACACAATGCCATCACTGTGAACGGCCAATTCCCCGGCCCAACGTTGGAAATCAACAATGGAGACACTTTAGTCGTCAAAGTCACCAACAAAGCTCGTTACAATGTCACCATTCATTGGCACGGTGTTAGGCAAATGAGAACAGGATGGGCAGATGGACCAGAATTTGTGACTCAGTGCCCCATTCGTCCTGGAGGAAGTTACACCTACCGTTTTACCGTTCAAGGACAAGAAGGCACACTTTGGTGGCATGCTCATAGCTCCTGGCTTAGAGCCACCGTTTATGGTGCTTTAATCATTCGTCCCAGGGAAGGAGAACTCTACCCTTTCCCTAAGCCAAACCACGACACACCCATTCTTCTTGGGGAATGGTGGGACGCAAACCCTATTGATGTAGTGAGGCAGGCCACACGAACTGGAGGAGCTCCTAACGTGTCTGATGCATACACCATTAATGGTCAACCTGGTGATCTTTACAAGTGCTCCTCCAAAGATACTACCATTGTTCCGATTCATGCTGGAGAAACAAACCTTCTACGTGTCATCAATGCTGCACTCAATCAACCTCTCTTTTTTACCGTCGCAAACCATAAACTTACGGTGGTTGGCGCCGACGCCTCCTACCTCAAACCCTTCACCACCAAAGTCCTCATGTTGGGACCCGGCCAAACCACTGATGTCCTCCTTACCGCCGACCAGCCACCATCTCGGTACTACATGGCAGCGCGTGCATACCAATCTGCTCAAAACGCTCCGTTTGACAACACCACCACCACCGCAATATTGGAATACAGATCACCTCACCATGGTAACCATTCTCGGCATCATCATTCTAAAGGTGTTAAGAACAAAAGGAGACCTATAATGCCTCCACTCCCTGCTTACAACGACACAAACACCGTCACTGCTTTCAGCAGAAGCTTCAGAAGCCCCAGAAAAGTTGAGGTCCCCACGGAAATCGATCAAAGCCTTTTCTTCGCTGTGGGGTTAGGACTCAACAAATGCCCCAAAAACTTCAAACCAAATAGGTGTCAGGGACCCAATGGTACGAGGTTCACTGCGAGCATGAACAACGTGTCTTTCGTGCTCCCCAACAACGTTTCCATCTTGCAGGCTCAATACCTCGGAATCCCGGGAGTGTTCACGACCGATTTTCCGGGGAAGCCGCCGGTGAAGTTCGATTACACCGGCAACGTGAGCCGTTCATTGTGGCAACCTATTCCCGGGACTAAGGCTCACAAGTTGAAGTTCGGATCGAGGGTTGAGATTGTTTTGCAGGATACTAGCATTGTTACTCCTGAGAACCACCCTATCCATCTCCATGGCTATGATTTCTACATTGTTGCAGAGGGGTTCGGGAACTTCGACCCGAAGAAAGACAGGGCGAAATTCAACCTTGTCGATCCTCCTTTGAGGAACACAGTGGCTGTCCCTGTAAATGGATGGGCAGTTATTCGATTTGTTGCTGATAATCCAGGTGCATGGCTTATGCATTGCCACTTGGACGTCCACATAGGGTGGGGTTTGGCGACGGTGTTGGTGGTGGAGAACGGCGTTGGGAAATTGCAATTCATAGAGCCTCCTCCAGTGGATCTGCCTCTTTGTTAG 1743 0.4934 MEAAKTSIFLAIIFLLLTSALSLANAKVHAHEFVVEATPVKRLCKTHNAITVNGQFPGPTLEINNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPREGELYPFPKPNHDTPILLGEWWDANPIDVVRQATRTGGAPNVSDAYTINGQPGDLYKCSSKDTTIVPIHAGETNLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLLTADQPPSRYYMAARAYQSAQNAPFDNTTTTAILEYRSPHHGNHSRHHHSKGVKNKRRPIMPPLPAYNDTNTVTAFSRSFRSPRKVEVPTEIDQSLFFAVGLGLNKCPKNFKPNRCQGPNGTRFTASMNNVSFVLPNNVSILQAQYLGIPGVFTTDFPGKPPVKFDYTGNVSRSLWQPIPGTKAHKLKFGSRVEIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDRAKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLMHCHLDVHIGWGLATVLVVENGVGKLQFIEPPPVDLPLC 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03036 580 ProSitePatterns Multicopper oxidases signature 1. 538 558 IPR033138 -
Vian2g03036 580 MobiDBLite consensus disorder prediction 312 339 - -
Vian2g03036 580 SUPERFAMILY Cupredoxins 24 174 IPR008972 -
Vian2g03036 580 SUPERFAMILY Cupredoxins 155 356 IPR008972 -
Vian2g03036 580 Gene3D - 159 358 IPR008972 -
Vian2g03036 580 Gene3D - 379 580 IPR008972 -
Vian2g03036 580 CDD CuRO_1_LCC_plant 31 147 IPR034288 GO:0005507
Vian2g03036 580 MobiDBLite consensus disorder prediction 314 329 - -
Vian2g03036 580 NCBIfam laccase 26 580 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vian2g03036 580 FunFam Laccase 159 358 - -
Vian2g03036 580 Pfam Multicopper oxidase 35 149 IPR011707 GO:0005507
Vian2g03036 580 FunFam Laccase 17 147 - -
Vian2g03036 580 ProSitePatterns Multicopper oxidases signature 2. 543 554 IPR002355 GO:0005507
Vian2g03036 580 SUPERFAMILY Cupredoxins 362 580 IPR008972 -
Vian2g03036 580 CDD CuRO_2_LCC_plant 163 309 IPR034285 -
Vian2g03036 580 Pfam Multicopper oxidase 430 562 IPR011706 GO:0005507|GO:0016491
Vian2g03036 580 Pfam Multicopper oxidase 161 310 IPR001117 -
Vian2g03036 580 Gene3D - 30 154 IPR008972 -
Vian2g03036 580 CDD CuRO_3_LCC_plant 425 563 IPR034289 GO:0005507
Vian2g03036 580 PANTHER MULTI-COPPER OXIDASE 30 565 IPR045087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03036 Vian-Chr2 51028557 51031503 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03036 K05909 - gmx:547704 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03036 2 51028557 51031503 Vian7g01528 7 24060340 24063232 PCT