Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02993 ATGGCTTTTTCCTCAAAAGAAGAGAAATCCAAGAGAATAATGAGGGGCTTCAAGACTCTCTTCTTCTTGATCACTATGGTTATATCGCTTCTTCTTTTCTCTGCCCCGGTTCTTCTTGTTATCGCCGATGCGCTTCTTCCTTCCGCTCTTCTCTCCACCATTTCCTCCTCTTCTCTCTCCTTGGAAAATCTCGCTTCCCATTTCCACGACTACGATTTCCGATACTCCCTCATTGATATACCCCTCATCTCCATAATACGATCCTTCATCATCTTCTGTGTTTATAGCTTGTGTGACGGACCCAGGCTTTCGCACGGACCTTATTTGGGGATTACGACCATGTGTTCTGTATTGTCTCTGATGTTTGTGTCGTTGAAGGCTGTTTACATCTTCAGTGTTCGGGGGATTGATCGAAGTGGGTATGTTGGAGGGACCGAAATAGCTCTGTTCGTATGCTCTTGTGCGTTGGCCGTGGGGCATGTTGTCGTGGCCTACAGAACAAGTTGCAGGGAAAGAAGAAAGCTTTTGGTCTACAAAATTGACATTGAAGCTATTTCAGCTTGCAAAAATGGGTATCCCAGGTACCTCAAGATTCCTCAGGAAGAACGAATCAAATAA 618 0.4498 MAFSSKEEKSKRIMRGFKTLFFLITMVISLLLFSAPVLLVIADALLPSALLSTISSSSLSLENLASHFHDYDFRYSLIDIPLISIIRSFIIFCVYSLCDGPRLSHGPYLGITTMCSVLSLMFVSLKAVYIFSVRGIDRSGYVGGTEIALFVCSCALAVGHVVVAYRTSCRERRKLLVYKIDIEAISACKNGYPRYLKIPQEERIK 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02993 205 Pfam Cholesterol-capturing domain 56 129 IPR019498 -
Vian2g02993 205 PANTHER ALPHA/BETA HYDROLASE RELATED PROTEIN 5 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02993 Vian-Chr2 50571171 50573169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02993 8 200 Miscellaneous Gene Families AT1G80280 43.627 4.99e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02993 - - gmx:100795655 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02993 2 50571171 50573169 Vian2g02993 2 50571171 50573169 ECH
Vian2g02993 2 50571171 50573169 Vian7g01573 7 24662258 24663151 PCT