Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02974 ATGACCCGTTTTTCCGAGAGGCTCCGTTTGCGCTGGTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCACTCTCCACAATCTCTGCAAGTCCCTCGTTGGCTTCCTACTCTCCCAAACCCTACCCTTCCTCGCTATGGATAACTTCTTCTCCGACTACCTCACCGATGACTTCGATTCCTCCCCCTACCGTCCCCACCGCCGCTTCCTCCAAGACCACGACCTTGATTTTGCCCACGAGAGGGTCTACCTCCTCCCCTACAGGTGGCTGGTGGAAATGGAAGGTGAAGCTGATCGAAGAGAGGGTGTGCTTTATACGGTGACGTGTAATTCCGATTCCGACTCCGAGATTTCGCTTCATCTGAGGAAGGAGGAGGAGCGCCACAAGATTGGGGTTTCTGGTCGTCAGTATGCGTTGGTTCCCGAGGGAGTTTGGTTGCGAACACTCAAACGGTATAACGATTCTAATAATGAAGTGAAAGATTTAGGAAGCCTCTCAAATGCAGAGGATTGTTTGCCAGAATTGTTCCCCTTGCAAGTTAAGATATTTTTTTCGCTGGAAACCAGTTCACTGGAAGCAAAAATAAGCCAAAAGGAAAATGTGGCTGACTTCTATGAGAAAGCATGTGACGTTTTCAATTCTGCATATAACCCCGTGCATATTTGGGACTTCTCAGGGCAGACGACACAGTTTTTCTTGAATGACAAATCAGGATTGCCACATGATTCTTCTGGTCAATCTGTAAAAGAGGTTACTTTGGAGTTACAAGTACACGGGCTTCCCGATTCTATGAGGGGTAATGGGGGCAATGAGATGATTTTAGATAGGTCTCAGATGGAATGTTCACACAGTGGTTCTGTTACAATGAATGGAAGCACTGACAATGTAGCCCCCTGCAAAACAGCCAACTATTTTCGAGGTAGTAGTTGTAGAGCAATTCGATCTTTGGGCTTGACAGGATTACAGAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTACCATAAAGAGATTAATTATGAAAATCCATTGGGGATGAATGGAGAACTAGCCCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCCAGATATATACCCATTGCACCAAGAACGTTCAAGATGAAACTGGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAGCTTCTTGCTTTTTTGTTGGATGGGTTGCATGAAGACCTTAATCGAGTGAAACGAAAGCCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCGGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAGTAGTTGATTTGTGCCAAGGCCAGTTTCGGTCAACGCTAGTTTGCCCTATTTGCAAGAAGGTTTCTATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCATCTACAACGATACGGACCATGACTTTGACGGTCATAAGCACTGACGGGATTACATTGCCTTCTACACTTACGGTAACAGTACCTAAATGTGGAACACTGAAGGATCTTATTGGGGCTTTAAGTACTTCTTGTTCTCTGAAAGAAGATGAAACCCTCTTGGTGGCTGAGATATACAAGAATAAAATTTTTCGAGTATTCGAGAATCCTTCTGAATCATTAGGTGAAATTAGAGATCAAGATAAAGTTGTTGCTTATCGAATGCAGAAGGATACTGAAACTACTCCCTTGGTTGTTTTTGTCCATGAACGTTCGGTGGAAACGTTGTTTGGTATTCCCCTTGTAACAAGGTTGTCCAATATTTCTTGTGGATATGATGTTCAAAGGGAGTTTCTGAAGATAATCAATCCATTTGTGATGCGCGCTAAAGATGTATCGGATGATTGTGAAAATAATGAAGGTATTAGTAAAAGACCAAGTGAAGATGATGAATGGGGGGATACTACTAACTCCTGCGCAATAGGAAATGATACAGACTCAATCATTGGAACAGATGATGGCATACATTTGTCGACTGACTTTGAATTCTACTTACTTGGAATGGAGAATGGCAAGATAATATTGGACAAACCATTAACAGTGACAACATTGCCCAGAAAGGAGCCTCCGGTAGTTGTCGTACTATGGTCGGATAAGATGCTTAAAATGTATAATACATCTCTGCTTGACTCATTGCCCGAGGTTTTCAAGTCCCAGCTATTCACCAAGAGAATAGAAGAATCAGTTTCTATTTACAAGTGTCTTGAAGCCTTCTTGAAAGAAGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCTAACTGCAAAAAACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCTGAGATCCTTGTTGTTCATTTGAAGAGGTTCTCGTACAGCCGATACTTGAAGAACAAGCTGGAAACATTTGTTGATTTTCCAATTAATAATCTGGACTTGTCAACATATGTAGCATATGGGAATAGTCAGTCTACCGACCGCTATCAGTTATACGCTATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGATATGGCTATGATAAATGGTATGATTTTGATGACAGCAGAGTCGAACCTGTTAATGAGGACACGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAG 2733 0.4252 MTRFSERLRLRWLFPKPTRFLALVSLSTLHNLCKSLVGFLLSQTLPFLAMDNFFSDYLTDDFDSSPYRPHRRFLQDHDLDFAHERVYLLPYRWLVEMEGEADRREGVLYTVTCNSDSDSEISLHLRKEEERHKIGVSGRQYALVPEGVWLRTLKRYNDSNNEVKDLGSLSNAEDCLPELFPLQVKIFFSLETSSLEAKISQKENVADFYEKACDVFNSAYNPVHIWDFSGQTTQFFLNDKSGLPHDSSGQSVKEVTLELQVHGLPDSMRGNGGNEMILDRSQMECSHSGSVTMNGSTDNVAPCKTANYFRGSSCRAIRSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYHKEINYENPLGMNGELALAFGDLLRKLWVPRYIPIAPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGITLPSTLTVTVPKCGTLKDLIGALSTSCSLKEDETLLVAEIYKNKIFRVFENPSESLGEIRDQDKVVAYRMQKDTETTPLVVFVHERSVETLFGIPLVTRLSNISCGYDVQREFLKIINPFVMRAKDVSDDCENNEGISKRPSEDDEWGDTTNSCAIGNDTDSIIGTDDGIHLSTDFEFYLLGMENGKIILDKPLTVTTLPRKEPPVVVVLWSDKMLKMYNTSLLDSLPEVFKSQLFTKRIEESVSIYKCLEAFLKEEPLGPEDMWYCPNCKKPQQATKKLDLWRLPEILVVHLKRFSYSRYLKNKLETFVDFPINNLDLSTYVAYGNSQSTDRYQLYAISCHYGGLGGGHYTAFVRYGYDKWYDFDDSRVEPVNEDTIKTPAAYVLFYRKV 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02974 910 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 257 909 - -
Vian2g02974 910 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 323 910 IPR028889 -
Vian2g02974 910 Gene3D Cysteine proteinases 573 910 - -
Vian2g02974 910 CDD Peptidase_C19R 757 908 - -
Vian2g02974 910 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 324 339 IPR018200 GO:0004843|GO:0006511
Vian2g02974 910 SUPERFAMILY Cysteine proteinases 321 909 IPR038765 -
Vian2g02974 910 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 853 870 IPR018200 GO:0004843|GO:0006511
Vian2g02974 910 Gene3D Cysteine proteinases 311 556 - -
Vian2g02974 910 Pfam Ubiquitin carboxyl-terminal hydrolase 323 907 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02974 Vian-Chr2 50396766 50404140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02974 764 910 Miscellaneous Gene Families AT4G31670 35.333 2.03e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02974 - K21343 gmx:100791802 1487.24