Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02970 ATGGACTCTTCTTCCATCTATGGCGTCTCCCACATCTTCACCTTCTTCCTTCTCTTCCTTTTACAACTATGTTCACTCTCCGCATTCCCTCACAACTCTTCAACCACTCCTCAGATTAACTCCAACTCCATCCTCGTCGCGCTACTCGATTCCCATTACACCGAACTCGCCGAGCTCGTCGAGAAAGCACTTCTTCTCCAGCAACTTGAAGACGCCGTCGGCAATCACAACATCACCATCTTCGCCCCGCGAAACAAGGCCCTCGAACGCGACCTCGACCCCGAGTTCAAGCGCTTCCTCCTCGAGCCTCGCAATCTTCGCTCCCTTCAGACACTCCTCATGTCCCACATTCTCCCCACGCGAATCTCCTCCCGCCACTGGCCCAACTCCGATCGCCATCACTCCACTCTCGGAAACCATCACCACCTGCATTTAGCCACAAATCCCTCCGGCCAGATGACCGTCGACGCCGCCGAGATCCTCCGCGCCGACGACGTCGTCCGCCCCGACGGAATCATCCACGGCATCGAGCGTCTCATAGTCCCCCGATCCGTCCAGGAGGACTTCAACCGGCGCCGCAACCTCGCCGACATCTCCGCCGTCATCCCGGAGGGTGCGCCGGAGATCGATCCCCGCACCCACCGCCTCAAGAAGCCCGCCCCAGTCCCCGCCGGCGCCCCTCCCGTTCTCCCAATCTACGATGCCTTGGCGCCGGGACCGTCCATCGCTCCCGCACCGGCGCCGGGACCCGGAGGCCCGAGGCACCACTTCAATGGCGAGCGGCAGGTGAAGGACTTCATCCACACGCTCTTGCATTACGGAGGGTACAACGAAATGGCCGATATTCTCGTTAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTCGTTTCAGAGGGTTACGTCCTTACCGTTTTGGCCCCCAACGACGAAGCCATGGCGAAGTTGACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAGCAGATTATGTACTATCACATTATTCCCGAGTACCAAACCGAAGAGAGTATGTACAATGCCGTCAGAAGGTTCGGTAAGGTCCGCTACGATACCCTGCGCTTACCCCACAAGGTTCTCGCTCAGGAGTCTGACGGTTCCGTTAAATTCGGTCACGGCGATTCCTCCGCATACTTGTTCGATCCTGATATTTACACCGATGGAAGGATCTCCGTCCAGGGAATCGACGGCGTTCTTATCCCCCCGGAGGAAGAGGAAGAACGCACCCAGCGCACCACTCCACTTGTCAAGGTTGCCGCTAAACCAAGAAGAGTTAGCAATTGGGTTGGGAAGCTTGAAGGAAAGGAGATCGTGTTTATATTTATGGCATTGCCCTTTCTGGAAAGTGCTGGTGTTGAAGTGGAATTATTCACCGGCACCACGTGTGAAGCCATTGTTGTTTTACTTTACAACAAGGGAGTTTTAGTGGATCGCTTGTACAGTGAGTCTTCTCTTTTTCTATTGATTTATCTTTTGGGAGCTGCCTAA 1509 0.558 MDSSSIYGVSHIFTFFLLFLLQLCSLSAFPHNSSTTPQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNKALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRISSRHWPNSDRHHSTLGNHHHLHLATNPSGQMTVDAAEILRADDVVRPDGIIHGIERLIVPRSVQEDFNRRRNLADISAVIPEGAPEIDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGPRHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEERTQRTTPLVKVAAKPRRVSNWVGKLEGKEIVFIFMALPFLESAGVEVELFTGTTCEAIVVLLYNKGVLVDRLYSESSLFLLIYLLGAA 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02970 502 SMART fasc_3 79 183 IPR000782 -
Vian2g02970 502 SMART fasc_3 304 409 IPR000782 -
Vian2g02970 502 ProSiteProfiles FAS1/BIgH3 domain profile. 263 406 IPR000782 -
Vian2g02970 502 Gene3D FAS1 domain 282 409 IPR036378 -
Vian2g02970 502 Pfam Fasciclin domain 298 408 IPR000782 -
Vian2g02970 502 Pfam Fasciclin domain 52 182 IPR000782 -
Vian2g02970 502 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 432 IPR044654 -
Vian2g02970 502 SUPERFAMILY FAS1 domain 34 183 IPR036378 -
Vian2g02970 502 Gene3D FAS1 domain 44 182 IPR036378 -
Vian2g02970 502 ProSiteProfiles FAS1/BIgH3 domain profile. 40 180 IPR000782 -
Vian2g02970 502 FunFam Fasciclin-like arabinogalactan protein 16 258 409 - -
Vian2g02970 502 SUPERFAMILY FAS1 domain 242 410 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02970 Vian-Chr2 50354692 50356402 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02970 - - gmx:100818575 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02970 2 50354692 50356402 Vian2g02970 2 50354692 50356402 ECH