Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02949 ATGCGAAGAGCCCGAAATATGAGACCAAACATAGTTTCTGAGGCAGGGTTGCCTACTAGGATGAATCAATGGTGGGAAAACATTCCATTTCTCACTTCTGCAGTGGTGGTTGTCTGTGGAGTCATTTACTTGGTTTGTCTTTTGGTTGGATACGATTCCTTTGCTGAGGTTTGCTTCTTGCCATCTGCTGTTGTGTCACGGTTTCAAGTTTACAGGTTTTATACTTCCATTATCTTCCATGGTTCACTGCTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCCTTGGGGTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTATATGTCATTATTTTGTTGGCTACAAGCAATGCCATATTCCACGTGCTCATAGCACTGCTGGTGGCACACAATCCTGTTCTTACATATGATTACCTCATGAATGAGTGTGCCATAGGCTTCTCAGGTGTTCTATTTTCAATGATTGTTATAGAGACAAGCTTGAGTGGAGTTCAATCCAGGAGTGTTTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGGTAGTATTCCAGCTTCTCATGCAAAATGTTTCACTACTCGGGCACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGATTGTTTAATTTCCTCATACCTGGAACCACTTTTTATTCTTCTATTGAATCCTCGTCTTGGCTTTCATCATGTGTGAGACGTCCAAAATTTATCGTTTGCACGGGTGGAAATCCTTCGGGTTATATTCCTACACATACAAACCAAAATTCAACAGGTACTACTAGTTCTTTGGAAGTAGATTTTTCTAGATATTTAAGCAGCTGGCAACCGTGTTTATCAACTGCCTTTGAATCTATTGATTCCCTGATGTCAACTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGGTTCTGGTCAAGATCAAGCTCCTTCTCATCTTCATTCAGATTCAAATCTTCAAGAAAGACTATTGGAGGATAGTAGTCCCAATAATCCTTTAGTTTCATCCACTCCTAGTAACACTCATCAGTTATCAGAAGGAAGGCATTCAGCTGTTAATGTAGCTACAACGACTGCTGTTCCACAGCATCAGGGTGCAGTCGTTTCGGAAGAAGGGATTAAAAAACTCGTATCAATGGGCTTTGACAGGACGCAAGTGGAAGTGGCGCTTGCAGCTGCTGATGGTAATATCAATGTTGCAGTGGAAATACTCATGAGCCAGCAGAGTTGA 1263 0.422 MRRARNMRPNIVSEAGLPTRMNQWWENIPFLTSAVVVVCGVIYLVCLLVGYDSFAEVCFLPSAVVSRFQVYRFYTSIIFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVIILLATSNAIFHVLIALLVAHNPVLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTTFYSSIESSSWLSSCVRRPKFIVCTGGNPSGYIPTHTNQNSTGTTSSLEVDFSRYLSSWQPCLSTAFESIDSLMSTEDSRFPGRGRTLGSGQDQAPSHLHSDSNLQERLLEDSSPNNPLVSSTPSNTHQLSEGRHSAVNVATTTAVPQHQGAVVSEEGIKKLVSMGFDRTQVEVALAAADGNINVAVEILMSQQS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02949 420 Gene3D - 21 219 IPR035952 -
Vian2g02949 420 Pfam UBA/TS-N domain 381 415 IPR015940 -
Vian2g02949 420 FunFam UV excision repair protein RAD23 homolog 378 419 - -
Vian2g02949 420 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 378 418 IPR015940 -
Vian2g02949 420 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016020
Vian2g02949 420 MobiDBLite consensus disorder prediction 315 360 - -
Vian2g02949 420 Gene3D - 352 420 - -
Vian2g02949 420 CDD UBA_At3g58460_like 381 416 - -
Vian2g02949 420 FunFam Rhomboid-like protein 15 22 219 - -
Vian2g02949 420 MobiDBLite consensus disorder prediction 303 360 - -
Vian2g02949 420 SUPERFAMILY Rhomboid-like 25 220 IPR035952 -
Vian2g02949 420 SMART uba_6 380 417 IPR015940 -
Vian2g02949 420 PANTHER DER1-LIKE PROTEIN, DERLIN 21 314 - -
Vian2g02949 420 SUPERFAMILY UBA-like 373 419 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02949 Vian-Chr2 50168754 50177486 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02949 - - gmx:100805745 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02949 2 50168754 50177486 Vian2g02949 2 50168754 50177486 ECH