Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02932 ATGGTGGGGGTTTCTTCGCCTCACTCTCAAACTTCATCACCCCCTACCGGATATAAAGTTCAATTTGCAAGTGACGATGATCCATTTAGGCAAACTGATCTCTTTCAGGACACCTTGGCGCTCAATAGCCCTTTCACTGAAACGGAGTTTGAAAATCTCAATCTGGACACTGAGATTGTAGAGGATCCTGAGCCTGCAGAGGACATGGCAACAGGCAAAAGGTGCGATTATGAACAATATGTTCTTGATAGCGAGGATGAAGAAATGAATCACAGACATGTTGGCAAAGAATTTATTGAGGATGAAACTAGTCCAACAGTGAGAATTCCTTCGACACTCTTCCAGAAAAGACTGCCCAAGCCACCTCGTGAGCAAGTAGAAGCAAACGCCACCACTTCTGGGAACTCTACTGCTGAACATAATATGCTTGAAGACGACAAAAAAGCTTTAGTTGATTCGGGCAACTTTGATTACAACGACCGTTTATATCCACCTGCAACCCTAAATCACATTCAGTCACCAGAGCCTGGGAATTCAACCCAAGCTGCACTTGGCTTTGTGGATAAGTACTTGTCTTCAAATGATTTGGACTTGCTTCAAGGAGTTCATTGTGGAAAGACCGCTAGGGAGAAATCACCCAATGTCCTGAATGCAAGAGGACCACTAAATCTTGCTAAGATTAAAGCCCGAACTAGAAATGAAGAGAAAGAACCTTTCAAATGGGTTGACAGTTGCCAACATGACAACAGAGGTCGTATGTTTGGTCAAAAAATTGAAGCATCATCAAGTTTTGGAAGATACAAACAGACATATACGAGAAGAAGGAAAAAAGGTGGTCATCTTCAGAGCCAAGGAAACTGTAGTAAAAGTGATACATTTGATGAGAAGTTAGGCCGAGGACCGAGAATCGCAATTGGAAATAATAACTCTCTCAAGGAATTGAATGTTCAACCAAGTTCTATAAGAGAGAATGCTAATGTTTATTCCAGCGTAACAGATGCAGAGGACATGTCTGATATTGGTTTAGGCACTCAAATAGCTGCTGAAGCAATGAATGCCTTAGCTTTAATGCCCCCTTATGGCTTCCAGTTCAATGATACCCATCAACCAGAGAATGCATTAGACGGCTCTTTGACTGATTTGACAGAGAATGAAACTCATCTGAAAAATTCTTCAAATATTCCGAATCCTAGTTTACATTCTATGAAAATAAAATCAAATAAGAAAAATGCATCCTCCTCTAGATTTAGTAAAATAACTTCTAGCTCATCTTGCAAGCACACTGACAAACAGGAGTCAAATGTTGTCTCGGGTAAAATGAAACAAATTATGAAGAGCAAGTCAACTGCTGAGGGGCGGTTTGAAAATAATAATAGTTTCCTAGAATGCGGTAAACATGTATTGCTGGAAGAGGTTTGCCCACTGGGAGAATATACAAGTTTCCAACCTGCTTCCGAAGAGGAATCCGAACATAGGAACAATGATAGTGGACATCCAAGAATCAAAGATCAACCAAGCCATCGTACACAGGAGAACAGTAATGTCATGGAGAAGGGTATTAAACACAAGAGAAAGGGAACTGGTTTAGTGGCTGATCCAGTGAAGTTGGGTGCAAGGACTAAGCGTCTTAAATTCCTTGGCAATTCATGTATGCTTGCTAAGAAAGTCAAGTTGAATCATCTGACTGAAGTTAGCCCACAGTTATCTGCAACCCGCAGTTTTTCATGGACTGATTCTTGGGCTTATCCAAAAAGATCAAGAGGGAAAAGAAAGGGGGCTAATATGGGAACCAATCTCAATGCATCATCTGTTTTGTGTATTGATGGAAAAGAAAACAATGTCTTCTCCACAAGAAGTCTAGAGGACCTGGCCAATGCTTCATGTGTAGATGATGGCAGATGCTTGTTACAGGGGGACTTTGTGCCACCAGGCTCATCTGGTGATGCAATGAAGGTACAAAACTTTCCTGATATGCACCCTTTGTTGTTGCCACATGTTGAAAGATCATCAAACAAAAGTGTTGCACAATCAAGATCGGGAATTCGTGCTACAGTTGTACCAAGTGAAGGTGTAAAAGTTTCAAATGTAAATCATTCATGCATTGAGCGTCACAAAAAACTGTGTGTAAAAACCCAGCCTAGGTCTTCACTTTTGAAAGAGCTTACAAGATTAGGAGTTCCTGAGTCCATGTCAGATGTGATGTGGAAAGATCTGCGACATCATAGAGATATGACAGACGTTCGAGTTCTGTTTAGTCAGCATTTGGATGACAGTATCATTAAGCGACAAAAAAAGATATTGAAACGTCTCAATATATCTGTTGCATCAAGTTCAATGGAGGCCACCCATTTCGTAGCTGACAAATTTACACGCACAAAGAATATGTTGGAAGCAATTGCTCTTGGGAAATTAATTGTGAATCACTTGTGGCTTGAGAGCTGTGGACAAGCCAACTGTTTTATTGACGAGAAAAATTACATTCTGAGAGATATGAAAAAGGAAAAGGAAATAGGTTTCAACATGCCAGTTTCTCTTGCTCTCGCAAGAGAAAAGCCACTCCTAAAGGGTAAAAGAGTTTACATCACGCCACATGTTAAACCTGATAAGGAACTGATTGCAAGTTTGGTCACAGCTGTTCATGGCCAGGTAGTAGATCAAAGTCAGGTGTGTGGTGACATGAAGGATAATATCTTTGATGATCTGTTGATTCTTTCTTGTGAAGACGACCATGCAATATGCCACCGTTTATTTAAGAGAGGAATTGCAGTTTACAGTTCAGAGCTAGTTCTGAATGGAATTATAATCCAAAAATTGGAACTTGAGAGTTCACCTGGAAGAGCCTTGTCCATTGGCTCAAGCACAACTTGCTCTATGCCTTGTAAATGA 2886 0.4068 MVGVSSPHSQTSSPPTGYKVQFASDDDPFRQTDLFQDTLALNSPFTETEFENLNLDTEIVEDPEPAEDMATGKRCDYEQYVLDSEDEEMNHRHVGKEFIEDETSPTVRIPSTLFQKRLPKPPREQVEANATTSGNSTAEHNMLEDDKKALVDSGNFDYNDRLYPPATLNHIQSPEPGNSTQAALGFVDKYLSSNDLDLLQGVHCGKTAREKSPNVLNARGPLNLAKIKARTRNEEKEPFKWVDSCQHDNRGRMFGQKIEASSSFGRYKQTYTRRRKKGGHLQSQGNCSKSDTFDEKLGRGPRIAIGNNNSLKELNVQPSSIRENANVYSSVTDAEDMSDIGLGTQIAAEAMNALALMPPYGFQFNDTHQPENALDGSLTDLTENETHLKNSSNIPNPSLHSMKIKSNKKNASSSRFSKITSSSSCKHTDKQESNVVSGKMKQIMKSKSTAEGRFENNNSFLECGKHVLLEEVCPLGEYTSFQPASEEESEHRNNDSGHPRIKDQPSHRTQENSNVMEKGIKHKRKGTGLVADPVKLGARTKRLKFLGNSCMLAKKVKLNHLTEVSPQLSATRSFSWTDSWAYPKRSRGKRKGANMGTNLNASSVLCIDGKENNVFSTRSLEDLANASCVDDGRCLLQGDFVPPGSSGDAMKVQNFPDMHPLLLPHVERSSNKSVAQSRSGIRATVVPSEGVKVSNVNHSCIERHKKLCVKTQPRSSLLKELTRLGVPESMSDVMWKDLRHHRDMTDVRVLFSQHLDDSIIKRQKKILKRLNISVASSSMEATHFVADKFTRTKNMLEAIALGKLIVNHLWLESCGQANCFIDEKNYILRDMKKEKEIGFNMPVSLALAREKPLLKGKRVYITPHVKPDKELIASLVTAVHGQVVDQSQVCGDMKDNIFDDLLILSCEDDHAICHRLFKRGIAVYSSELVLNGIIIQKLELESSPGRALSIGSSTTCSMPCK 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02932 961 SMART BRCT_7 741 818 IPR001357 -
Vian2g02932 961 MobiDBLite consensus disorder prediction 387 450 - -
Vian2g02932 961 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 741 828 IPR001357 -
Vian2g02932 961 ProSiteProfiles BRCT domain profile. 739 828 IPR001357 -
Vian2g02932 961 MobiDBLite consensus disorder prediction 1 19 - -
Vian2g02932 961 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 101 942 - -
Vian2g02932 961 MobiDBLite consensus disorder prediction 118 142 - -
Vian2g02932 961 MobiDBLite consensus disorder prediction 274 301 - -
Vian2g02932 961 SUPERFAMILY BRCT domain 728 844 IPR036420 -
Vian2g02932 961 MobiDBLite consensus disorder prediction 481 524 - -
Vian2g02932 961 CDD BRCT_MDC1_rpt1 747 821 - -
Vian2g02932 961 CDD BRCT_PAXIP1_rpt6_like 853 939 - -
Vian2g02932 961 Gene3D BRCT domain 852 945 IPR036420 -
Vian2g02932 961 MobiDBLite consensus disorder prediction 1 25 - -
Vian2g02932 961 MobiDBLite consensus disorder prediction 484 507 - -
Vian2g02932 961 Gene3D BRCT domain 735 851 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02932 Vian-Chr2 50007429 50011538 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02932 K14972 - gmx:102659913 1324.69