Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02912 ATGTTAAGCCCAATACATTTTAGGCCTAATAAATCTGATTACAGAGCCCAACAAAAAGAACCCAACAGAATCAGTGCCTCATCTCATCCAAACACCAACGCCAACAACCACTCTGTATTAATGTACGCGCCGTTCCCTTCTCTATCCAGTCACTCTGTGGCCATGAATAGCTTAACGGCGAGTTTCACAGCTCGAATATGCGTCACGCGCCGCGACCTACTCCAAATGCGACGCCGTTCCACATTCAGCCGCGTCGCCACCAAACTCACACATCCAAGAATCGTTTGCATGGCGGAACCTTATCTGATAACGAAGTTGGATTCTGCGGAGAAAACCTGGAAAGAATTATCGGTCAAGCTTGCTGATCCAGACATCGTGTCTGATCCAAAGGAGTATCAGAAGCTAGCACAATCAGTGGCAGAGCTTGACGAGGTTGTGTCCGTCTACAGGCAATTTAAGGACTGTGAGAAGCTTCTAGAAGAAACCAAAGCTTTAGCGAAGGATGCTGGAAATGATGAGGATATGGTGGAGATGATATCTTATGAAATCGACTCGTTGTCCAAGCAACTCGCTAAGCTTGAGGACCAGCTTAAGTTCAATTCCAATGCGATGCTACTGCTTCCCAGTGATCCTCTGGATGCTAGAAACATAATGATTGAAGTACGAGCAGGCACTGGTGGTGACGAGGCTGGAATTTGGGCTGGTGATCTTGTAGGTCCGAATGCAGAAAAAGGAGGATACAAAACTTACGTAATGGAGATAAAAGGAAATCGTGTTTACAGTAAATTGAAATATGAATCTGGCGTCCACCGAGTTCAACGTGTTCCTCTAACAGAAGCACAGGGCCGGGTACATACTTCTACTGCAACAGTGGCTATCATGCCAGAGGCTGATGAAGTTGAAGTCGTAATTGACCCCAAAGATATTGAACTGACGACTGCACGTTCTGGGGGCGCTGGAGGTCAGAATGTAAACAAGGTTGAAACAGCCATTGATCTCTTCCATAAACCAACGGGAATCCGCATCTTTTGTACTGAAGAAAGAACACAGCTTAAAAACAAGAATCGTGCATTTCAGTTGCTCCGAGCAAAACTATATGAGATCAAGGTAAGGGAACAACAAGAGTCATTACGAAACCAAAGGAAATCACAGGTCGGTACAGGTGCACGAGCAGAAAAAATTCGGACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGACAAACTACGAGCTCACCTCTTTTCTTGATGGTGACATAGAAGATGCTGTTCAGTCTTGCGCTACAATGGAGCAAAAGGAACTTCTGGAAGAACTTGCTGAATCTGTAGGAGCTACGGCTGGCTGA 1356 0.4535 MLSPIHFRPNKSDYRAQQKEPNRISASSHPNTNANNHSVLMYAPFPSLSSHSVAMNSLTASFTARICVTRRDLLQMRRRSTFSRVATKLTHPRIVCMAEPYLITKLDSAEKTWKELSVKLADPDIVSDPKEYQKLAQSVAELDEVVSVYRQFKDCEKLLEETKALAKDAGNDEDMVEMISYEIDSLSKQLAKLEDQLKFNSNAMLLLPSDPLDARNIMIEVRAGTGGDEAGIWAGDLVGPNAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLKNKNRAFQLLRAKLYEIKVREQQESLRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKTNYELTSFLDGDIEDAVQSCATMEQKELLEELAESVGATAG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02912 451 SMART PCRF_a_2 164 266 IPR005139 GO:0006415
Vian2g02912 451 Pfam RF-1 domain 298 408 IPR000352 GO:0003747|GO:0006415
Vian2g02912 451 Gene3D - 96 211 - -
Vian2g02912 451 Gene3D - 213 305 - -
Vian2g02912 451 MobiDBLite consensus disorder prediction 1 32 - -
Vian2g02912 451 FunFam Peptide chain release factor 1 367 446 - -
Vian2g02912 451 PANTHER LD18447P 97 445 - -
Vian2g02912 451 FunFam Peptide chain release factor 1 305 370 - -
Vian2g02912 451 Pfam PCRF domain 242 291 IPR005139 GO:0006415
Vian2g02912 451 Pfam PCRF domain 110 238 IPR005139 GO:0006415
Vian2g02912 451 Gene3D - 306 367 - -
Vian2g02912 451 SUPERFAMILY Release factor 111 439 IPR045853 -
Vian2g02912 451 Coils Coil 176 203 - -
Vian2g02912 451 Gene3D - 368 450 - -
Vian2g02912 451 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 315 331 IPR000352 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02912 Vian-Chr2 49846152 49851294 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02912 K02835 - gmx:100805037 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02912 2 49846152 49851294 Vian2g02912 2 49846152 49851294 ECH