Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02888 ATGCTTCCTCTCTCCCTTCTCAAAACTGCCCAAGGCCACCCAATGTTGGTAGAACTGAAAAATGGAGAGACTTATAACGGCCATTTGGTTAATTGCGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGCACGTCTAAAGATGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAGGTTATTGACAAAGTTCAAGAAGAAACCAAAACCCGAGCAGATCGTAAACCACCTGGTGTGGGGCGTGGGAGGGGAAGAGGCAGAGAAGAAGGTGCTGGTGGACGTCAATCAAAAGGAATTGGGCGTGGTCTTGATGATGGTGGTACCAAGGGAGCTGGAGGAGGTCGAGGCAAGGGTGGCCCTAGCGGAAAGCCTGGTGGAAATAGAGTTAAATTGGGCGAGGTAGAGGGTGATTCTGACTGGTGGAATGAACTACTTCAGATGGACCAGTTGCAACCTCACTGCTCGTGTTTCCTTGGCCTCCACCTTTTTAATACTTTCCCACCAGCCATCGTGCCCTTCCCCCTTTCTTTCCCTCCAATGAAAAGTAGTGATGGAGCAATGTGTTGA 612 0.4837 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREEGAGGRQSKGIGRGLDDGGTKGAGGGRGKGGPSGKPGGNRVKLGEVEGDSDWWNELLQMDQLQPHCSCFLGLHLFNTFPPAIVPFPLSFPPMKSSDGAMC 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02888 203 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 2 117 IPR027141 GO:0006396
Vian2g02888 203 MobiDBLite consensus disorder prediction 80 109 - -
Vian2g02888 203 SMART Sm3 5 71 IPR001163 -
Vian2g02888 203 Pfam LSM domain 6 70 IPR001163 -
Vian2g02888 203 ProSiteProfiles Sm domain profile. 2 75 IPR047575 GO:0003723
Vian2g02888 203 FunFam U6 snRNA-associated Sm-like protein LSm4 1 83 - -
Vian2g02888 203 Gene3D - 1 83 - -
Vian2g02888 203 CDD LSm4 2 77 IPR034101 GO:0000398|GO:0000956
Vian2g02888 203 MobiDBLite consensus disorder prediction 80 148 - -
Vian2g02888 203 SUPERFAMILY Sm-like ribonucleoproteins 3 128 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02888 Vian-Chr2 49677874 49681002 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02888 K12623 - gmx:100786834 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02888 2 49677874 49681002 Vian2g02888 2 49677874 49681002 ECH