Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02860 ATGGCCTCTGCATCCTCCATGTCAGTTTCTTTAGAATGCGTGAATGCCTGCAAGCTGTGGAGAGGGGACGGAAGCGGAAAATTCGACTGTAGTCTTCTTTCCTGCGCATGGAAAGCTCCGAGGGTTCTCACTGGCTTTCTTGCGAGCACTGCTCATCCTCTTCACCAGTGTTCGGACTTGTACAAGGGACGTAATGGACGAAGGAACCGGTATAATTTTGGATGTGAAGCTTTTAGTGTAGGTGGTTCGTGTTCCGATGAACCACTTGATATTGTTCTTTTTGAAGGATTGTCTAGGTCAAACATGTCTCAAGTTGCTCCCAGAAGAGGGCAATTATGTTGTTCTTCAGCCTTCCCTTCCAACACCGCCACTGACTTTTCCCCAAAAAGTTTGTGGGAGGATCTTAAACCTGCTATTTCATACCTGTCTTCAAAAGAACTGGAGTTAGTCCACAATGCTTTTATGTTGGCGTTTAAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCACCCAGTTGAGGTTGCACGTATTCTTGGAGAACTTGAACTTGATTGGGAATCAATTGCTGCCGGATTACTTCATGATACAGTTGAGGATACAAATGTCGTTACTTTTGAGAGGATAGAGGAGGAGTTTGGTGCTACCGTGCGCCACATTGTGGAAGGAGAGACCAAGGTATCAAAACTTGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTTCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTAGCTATGACAGAGGAGGTTCGTGTTATAATTGTCAAATTAGCAGACAGGTTGCATAACATGCGTACACTATCGCATATGCCTCCACATAAACAGGCTAGCATTGCAATGGAGACATTGCAGGTATTTGCTCCTTTAGCGAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAACCTGTCATTTATGTACACAAATGCGGAAGACTATGCAAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTCTGGAGGCAAACAAAATATTTATGAAGAAAATCCAAGATGATCAATTATTAGACCTTCTAACTGTTAAAACAGAAGTCCGTGCTGTCTGTAAAGAGCCTTACAGTATCTATAAGGCAGTTCTCAAATCAAAAAGTTCAATCAGTGAGATTAACCAAATTGCACAGCTTCGTATTGTTATTAAACCAAAGCCATGCATTGGGGTTGGGCCTTTGTGCAATCCACAACAGATTTGCTATCATGTTCTGGGGTTAATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATCGCAACCCCCAAACCAAATGGCTACCAAAGTCTCCATACCACCGTGATTCCATTTTTGTACGAAAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGAGGCATTGCTGCGCATTATAGTGGGAGAGAATTTGTCACTGGCTTGGTTGGAAGTGCTACACCAAGTGGTAAAAGCTCAAGAGGGAAGACAGTTTGTCTTAACAACGCCAACATTGCTCTTAGAATTGGCTGGCTGAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTATTACAAGAGATCTTCTGGGTAGTCGTGTCTTTGTGTTCACGCCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTAGTGTCATTGATTATGCTTATATGATACACACTGAAATAGGAAACAAGATGGTAGCTGCGAAGGTCAATGGAAATCTTGTTTCTCCCACACATGTACTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCAGCAAATCTGCCTTTCAGAGGCATAAACAGTGGTTGCAACATGCTAAAACTCGGAGTGCGAGACACAAAATAATGAAGTTTCTAAGGGAACAAGCTGCACGCTCTGCTTCTGATATCACTACTGAAGCAGTCAATGACTTCGTTACTGACTCCGAGGGGGATAGCGAATCTGAAGAACTATCAAAAGGTTCCAAATATCCGTGGGGTAAAACGTTTGTGAATGGAGAGGAAATATCAACGTCAACAAGAAATGAGACTGTCCTCCAAAGTAAGAATGGAAGTGTTTGGATCCCCAAGGTCAACGGAAAACATAATAAGCATGTGCAGCGTGAAAGTTTCAACGGAAAAGGGGAGACGTTACTGCAGGGAAACCTTGTTGCAAAGATGATTCAAGTTAACATTCCAAGATATAAGGAGGTCCTGCCAGGTTTAGAAAGTTGGCAAGCACAGAAAATTGCTTCCTGGCACAATATGGAAGGGCACTCCATCCAGTGGTTATCTGTAGTATGTATAGACCGAAGAGGCATGATGGCTGAGGTCACTACAGTATTGTCCACTGCAGGCATAGCCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCACGTTGAAGGAAATTTAGAAAATTTGGTCAGTGCTTGCTCTAAAGTAGATCTGATATTGGGTGTTTTGGGATGGTCTACTGGTTGCAGCTGGCCGAGCTTAGTGGAAGACCGTGGCGTTCTCGAATGCTAG 2649 0.4281 MASASSMSVSLECVNACKLWRGDGSGKFDCSLLSCAWKAPRVLTGFLASTAHPLHQCSDLYKGRNGRRNRYNFGCEAFSVGGSCSDEPLDIVLFEGLSRSNMSQVAPRRGQLCCSSAFPSNTATDFSPKSLWEDLKPAISYLSSKELELVHNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQASIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLEANKIFMKKIQDDQLLDLLTVKTEVRAVCKEPYSIYKAVLKSKSSISEINQIAQLRIVIKPKPCIGVGPLCNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSGKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGASVIDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSASDITTEAVNDFVTDSEGDSESEELSKGSKYPWGKTFVNGEEISTSTRNETVLQSKNGSVWIPKVNGKHNKHVQRESFNGKGETLLQGNLVAKMIQVNIPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRRGMMAEVTTVLSTAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLVEDRGVLEC 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02860 882 Pfam TGS domain 566 625 IPR004095 -
Vian2g02860 882 SUPERFAMILY ACT-like 795 854 IPR045865 -
Vian2g02860 882 Gene3D Hypothetical protein af1432 130 325 - -
Vian2g02860 882 SUPERFAMILY TGS-like 553 625 IPR012676 -
Vian2g02860 882 SMART hd_13 168 288 IPR003607 -
Vian2g02860 882 CDD TGS_RSH 567 625 IPR033655 -
Vian2g02860 882 Pfam HD domain 153 310 - -
Vian2g02860 882 Gene3D Beta Polymerase, domain 2 327 481 IPR043519 -
Vian2g02860 882 FunFam GTP pyrophosphokinase (RelA/SpoT) 558 632 - -
Vian2g02860 882 Gene3D - 795 861 - -
Vian2g02860 882 CDD HDc 170 301 IPR003607 -
Vian2g02860 882 Pfam Region found in RelA / SpoT proteins 379 495 IPR007685 GO:0015969
Vian2g02860 882 SUPERFAMILY HD-domain/PDEase-like 137 325 - -
Vian2g02860 882 ProSiteProfiles TGS domain profile. 562 625 IPR004095 -
Vian2g02860 882 ProSiteProfiles ACT domain profile. 795 866 IPR002912 -
Vian2g02860 882 FunFam GTP pyrophosphokinase RelA 131 326 - -
Vian2g02860 882 SUPERFAMILY Nucleotidyltransferase 329 499 IPR043519 -
Vian2g02860 882 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 7 876 - -
Vian2g02860 882 CDD NT_Rel-Spo_like 369 489 IPR007685 GO:0015969
Vian2g02860 882 SMART RelA_SpoT_2 379 501 IPR007685 GO:0015969
Vian2g02860 882 Gene3D - 559 634 IPR012675 -
Vian2g02860 882 ProSiteProfiles HD domain profile. 172 279 IPR006674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02860 Vian-Chr2 49435932 49443245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02860 182 497 EF-hand Containing Proteins AT3G17470 29.755 1.41e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02860 K00951 - gmx:100814134 1610.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02860 2 49435932 49443245 Vian2g02860 2 49435932 49443245 ECH