LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g02833	ATGGGTCCTTCTCGTCGCAACAGCAATGGTCGATCACCGCTCGTCAATCAACAGCGTCAAATCACTTCGTTTTTCACCAAATCCCCGTCCCCCTCTCCCACTCTGGCCAAAACCAACCAAAAGCCAAACCCTAACCACGATTCAGATCCTAATCCTAGCCCTAGTTCCACGACTCTCACTCCCTCACCTCTCAATCCCAAGCCGAACAAATCCCTTCTTGTAATCGGCGCTTCCGTTTCTCCACCCTCTGCTTCGTCTTCTCTCTATGGCCAAGAAGTCGTTGGCCGAAGGGTTAAGGTTTATTGGCCGTTAGACAAAGCCTGGTACGAAGGTTCCATCAAATCCTTTGATAAAAGCACCTCCAAGCACGTGATTCGTTACTTAGATGACGAAGAGGAATCGCTCATCCTGGCCGAGGAGAAAATCGAGTGGCTCCACGAGTCCTCTACGAAGAAACTTAAACGTTTGCGTCGCGGATTCCCCGACATCAGGAAGATGGAGATTGATGATGAAGAATTAAAAGAAGGAAGTAATAAAGGAGAAAAAGAAGAAGAACATGATAATGTTAACGATGATGATGATGATTCCAATGACGAGGATTGGGGGAAGAATGCTGCATCATTGGAGGATGCTGGGGATGGGGAAGAAGATACGGATTTAGAGGACGAGGACGAAGAGGACGTAGCAGGAAGTGCTAAAGGAAAAAAGGTTGAGGCTAAAAAGCGGAAACTAAATGCAACGGATAAACTAGAGCCTGCGAAAAAGAGCAAGAGTGGAGTGGAAGTTTGTAAAGGGAGTTTCAAGCTCTCAGTGTTGGAGCCTACTACTAATTTAGAGATTAAAAAGACATCTAGTGGCGCTGACAATGTTTCATTTACTGAGACCTCTGAAAGATTTGCATCTCGTGAAGCTCAGAAACTGCGCTTCCTGAAAGTAGACCGCAGGGATGCCAAGCGAAGAAGAGCAGGGGATGAAAATTATGATTCAAGAACTCTCTACTTACCTCCGGATTTCTTAAAGAATTTGTCAGAGGGTCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTGTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGAGTTAAAGAGCTTGATTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGATTTCCAGAGAAGAACTTCTCAATGAACGCAGAGAAACTGGCTAGGAAGGGTTATCGTGTTCTTGTTGTGGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTCGTAAGGAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGTGAGATATGTGCAGTGGTAACAAAAGGTACATTAACGGATGGGGAGTTGTTGTCTGCAAACCCTGAAGCTGCATATTTAATGGCCCTAACTGAGCATCATGAGAAACTTCCAAATGAAATTTCAGAGCGTACCTATGGTGTTTGTATAGTTGATGTTGCCACGAGTAGAGTCATTCTTGGACAGTTTAAGGACGACTTGGACTGCAGTGCCTTGTGCTCTATCTTGTCTGAGATCAGGCCTGTTGAAATTGTTAAACCCGCCAAACAACTCAGTGCTGAAACGGAGAGAGCTCTGCTGAAGCATACCAGAAATCCTTTAGTGAATGAATTAATTCCAGGTGTGGAATTCTGGGATGCTGGCAAAACTCGGGATCAATTGAAGCAAATTTATGGGAACGCTAATGATGTTAGTGTTGAAGATAACGGGTTAGACTGCCTGCCAAATGTTTTACAGGAGCTGGTGAAAACAGGTGACAACAGTATAAGTGCACTTTCAGCACTAGGTGGTGCACTCTATTATCTGAAGCAGGCTTTTCTAGATGAGAGGTTGCTTAGATTTGCACAGTTTGAGTTACTTCCGCATTCTGGTTTTGATGATCTAGCTTCAAAACACTACATGGTTCTTGATGTGGCTGCCTTGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGGTTCTTCTGGCACACTCTATGCGCAACTAAACCAATGTGTTACTGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCAAGACCGTTATGTAATGTGGAGTCCATTAAGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAACCTACCATCTGCTCTAGAATTTCGTGGAGCATTATCCAAGCTACCTGACATTGAGAGATTGCTTGCACGCATATTTTGCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTTATTCTATACGAGGATGCAGCTAAGAAGCAAGTACAGGAGTTCATTGCAGCTCTCCGTGGCTGTGAACAGATGCTAGAAGCATGCTCTTCGCTTGCTGTCATTTTGAATGATGTCCAATCTAGACAACTTCATCATCTGTTAACACCGGGTAAAGGTCTTCCTGATGTTCGTATGGAACTTAATCATTTCAAGGAGGCTTTTGATTGGGTGGAAGCCAATAGCTCTGGGCGTATAATACCTCGTGAAGGAGTCGACACAGAGTATGCCTCAGCCTGTAAGACGGTTAAAGAGATTGAGTCCACTTTGTTGAAGCATCTCAAGAAGCAAAGAGAACTACTTGGAGACACATCAATTGCTTACGTCAATGTTGGAAAGGATGTGTACCTAATGGAAGTGCCAGAAAGTTTGTCTAGGAATATTCCTCGGGATTATGAATTGCGTTCATCCAGAAAAGGTTTCTTTAGGTACTGGACTCCGGATATTAAAATTTATTTAAAAGAACTCTCCCAAGCTGAATTGGAAAAGGAGTCCTTGTTGAAAAATACATTGCAGAGACTGATTGGGCGCTTTTGTGAAAACCACACCGAGTGGAAGCAGTTGGTCTCTGCAACTGCAGAACTGGATCTGTTGATCAGTTTAGCAATAGCTGGTGACTACTATGAAGGACCAACATGCACACCAGCTTTCGTTGGTGCATTATGTACTAAAGGAGCTCCTTACCTCCATGCTAAAAGTTTGGGGCACCCTGTCCTCAGGAGTGATACCCTAGGCAAGGGTGCGTTTGTTCCCAATGACATAACCATTGGTGGTTCGGATCAAGCCAGCTTTATCCTTCTAACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGTCAGGTTTGCTTGACTGTGATTTTGGCCCAGGTAGGAGCTGATGTCCCAGCAGAAAGCTTTGATTTGTCACCTGTTGATCGGATTTTTGTTCGAATGGGGGCCAAAGATAATATAATGGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACGATGCTGTCATCAGCCACTCGTAACTCATTGGTGGCTCTGGATGAGCTTGGGCGTGGGACTGCAACTTCTGATGGACAAGCAATTGCGGAATCAGTATTAGAACATTTTGTGCGGAAGGTGCAGTGTCGTGGATTGTTTTCTACCCATTATCATCGATTAGCTGTAGATTATCTCAACGATCCCAAGGTCTGTCTCAGTCACATGGCATGCCAAGTTGGTGATGGAATTGCAGGTTTAGACGAAGTCACCTTTCTTTACAGGCTAACGCCTGGTGCTTGCCCCAAGAGCTATGGTGTTAACGTTGCTCGGATAGCTGGACTTCCAACTTCTGTGCTTCAGAAAGCTGCTTCCAAATCTAGAGAATTTGAGGCCAGTTATGGTAAATGTAGAAAGGTGTCTTCTGAAACAAACTCTCCCAATAAAAACTGGGTTGACGAGATAGCAGCTATCATACGAAAATTGACCGAAATGGCCACCAATTTGAGTTGCCAGGAAACCCTTTGCGTTGGTTCCCTAAGGGAACTTCAGGACAAAGCACGAGAATCGATGCAGCGGCGATGTTAA	3873	0.4438	MGPSRRNSNGRSPLVNQQRQITSFFTKSPSPSPTLAKTNQKPNPNHDSDPNPSPSSTTLTPSPLNPKPNKSLLVIGASVSPPSASSSLYGQEVVGRRVKVYWPLDKAWYEGSIKSFDKSTSKHVIRYLDDEEESLILAEEKIEWLHESSTKKLKRLRRGFPDIRKMEIDDEELKEGSNKGEKEEEHDNVNDDDDDSNDEDWGKNAASLEDAGDGEEDTDLEDEDEEDVAGSAKGKKVEAKKRKLNATDKLEPAKKSKSGVEVCKGSFKLSVLEPTTNLEIKKTSSGADNVSFTETSERFASREAQKLRFLKVDRRDAKRRRAGDENYDSRTLYLPPDFLKNLSEGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGDQPHCGFPEKNFSMNAEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMALTEHHEKLPNEISERTYGVCIVDVATSRVILGQFKDDLDCSALCSILSEIRPVEIVKPAKQLSAETERALLKHTRNPLVNELIPGVEFWDAGKTRDQLKQIYGNANDVSVEDNGLDCLPNVLQELVKTGDNSISALSALGGALYYLKQAFLDERLLRFAQFELLPHSGFDDLASKHYMVLDVAALENLEIFENSRNGGSSGTLYAQLNQCVTAFGKRLLKTWLARPLCNVESIKERQEAVAGLKGVNLPSALEFRGALSKLPDIERLLARIFCSSEASGRNANKVILYEDAAKKQVQEFIAALRGCEQMLEACSSLAVILNDVQSRQLHHLLTPGKGLPDVRMELNHFKEAFDWVEANSSGRIIPREGVDTEYASACKTVKEIESTLLKHLKKQRELLGDTSIAYVNVGKDVYLMEVPESLSRNIPRDYELRSSRKGFFRYWTPDIKIYLKELSQAELEKESLLKNTLQRLIGRFCENHTEWKQLVSATAELDLLISLAIAGDYYEGPTCTPAFVGALCTKGAPYLHAKSLGHPVLRSDTLGKGAFVPNDITIGGSDQASFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTATSDGQAIAESVLEHFVRKVQCRGLFSTHYHRLAVDYLNDPKVCLSHMACQVGDGIAGLDEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQKAASKSREFEASYGKCRKVSSETNSPNKNWVDEIAAIIRKLTEMATNLSCQETLCVGSLRELQDKARESMQRRC	1290

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vian2g02833	1290	SUPERFAMILY	DNA repair protein MutS, domain III	653	974	IPR036187	-
Vian2g02833	1290	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	995	1226	IPR027417	-
Vian2g02833	1290	Pfam	MutS domain II	469	621	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Vian2g02833	1290	Coils	Coil	918	938	-	-
Vian2g02833	1290	CDD	Tudor_Agenet_AtEML-like	94	144	-	-
Vian2g02833	1290	FunFam	DNA mismatch repair protein	300	463	-	-
Vian2g02833	1290	Gene3D	-	988	1259	IPR027417	-
Vian2g02833	1290	Gene3D	-	650	971	-	-
Vian2g02833	1290	MobiDBLite	consensus disorder prediction	165	186	-	-
Vian2g02833	1290	Pfam	MutS domain III	656	971	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Vian2g02833	1290	FunFam	DNA mismatch repair protein	982	1258	-	-
Vian2g02833	1290	Gene3D	MutS, connector domain	467	648	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Vian2g02833	1290	Pfam	MutS domain I	346	458	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Vian2g02833	1290	Pfam	MutS domain V	1035	1225	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Vian2g02833	1290	SMART	mutATP5	1031	1223	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Vian2g02833	1290	Pfam	MutS family domain IV	840	929	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Vian2g02833	1290	MobiDBLite	consensus disorder prediction	1	72	-	-
Vian2g02833	1290	Gene3D	-	91	144	-	-
Vian2g02833	1290	SUPERFAMILY	DNA repair protein MutS, domain II	464	665	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Vian2g02833	1290	Gene3D	-	816	947	-	-
Vian2g02833	1290	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	346	1239	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Vian2g02833	1290	MobiDBLite	consensus disorder prediction	165	242	-	-
Vian2g02833	1290	SUPERFAMILY	DNA repair protein MutS, domain I	331	454	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Vian2g02833	1290	FunFam	DNA mismatch repair protein	816	947	-	-
Vian2g02833	1290	MobiDBLite	consensus disorder prediction	228	242	-	-
Vian2g02833	1290	SMART	TUDOR_7	90	148	IPR002999	-
Vian2g02833	1290	Gene3D	DNA repair protein MutS, domain I	301	462	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Vian2g02833	1290	PIRSF	Msh6	2	1270	IPR017261	GO:0006298\|GO:0030983
Vian2g02833	1290	MobiDBLite	consensus disorder prediction	1	55	-	-
Vian2g02833	1290	SMART	DNAend	670	1011	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Vian2g02833	1290	MobiDBLite	consensus disorder prediction	211	227	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g02833	Vian-Chr2	49218826	49229532	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g02833	K08737		-	gmx:100811104	2040

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian2g02833	2	49218826	49229532	Vian2g02833	2	49218826	49229532	ECH