Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02811 ATGGGTACGGAGAGAAAGAGGAAGGTGAGCTTGTTCGACGTGGTAGATGATTCTCTAGCGAAAAAGGCGAAATCAAATGGCGGCGCCAATAACAGCGTTGCCAATGCTCTCATCAATCGCTGGAACGCAAGGCCTTACTCTCAGAGGTACTTCGATATTTTGGAGAAGAGAAAAACCCTCCCTGTTTGGCACCAGAAAGAAGAGTTCTTACAAGTTCTCAAAGATAACCAGACTTTGATTCTTGTCGGTGAAACTGGTAGTGGCAAAACCACTCAGATTCCTCAGTTTGTTTTGGATGCTGTCGAGTTAGAGACACCAGACAAACGTAGGAAGATGATGATTGCGTGCACTCAGCCTCGGAGAGTGGCTGCGATGTCTGTTTCGCGTCGTGTGGCTGAAGAGATGGATGTAACCATAGGGGAAGAGGTTGGTTACAGTATCAGATTTGAAGACTGCAGTAGTGCGAGGACAGTTTTGAAGTATCTAACAGATGGTATGCTCTTAAGGGAAGCAATGACAGATCCGCTGTTGGAACGGTACAAGGTTATTATTCTTGATGAGGCTCACGAGAGGACTTTGGCCACTGATGTGTTATTTGGCCTTCTGAAAGAAGTGCTTAAAAATAGACCTGACTTGAAGTTGGTTGTTATGAGTGCTACTCTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTCATGAAAGTTCCTGGAAGGCTACATCCTGTTGAAATTTTCTACACACAGGAACCTGAAAGGGATTACTTGGAGGCTGGCATTAGGACAGTGGTACAAATACACATGTGTGAACCACCTGGAGATATACTTGTTTTTCTGACTGGAGAGGAAGAGATAGAAGATGCTTGCCGCAAAATAACAAAAGAAATTTCTAATCTGGGAGATCAGGTGGGCCCTGTGAAAGTGGTACCCCTGTATTCTACCCTTCCTCCAGCTATGCAGCAGAAGATTTTTGAGGCACCGCCACCTCCATTGAAGGAGGGTGGAATTCCTGGAAGGAAGATTGTGGTCTCAACAAACATAGCAGAAACTTCGTTGACAATTGATGGTATTGTTTATGTCATTGACCCTGGCTTTGCTAAGCAGAAGGTTTATAATCCACGAGTTCGTGTGGAGTCTTTATTAGTATCACCAATATCAAAAGCTAGTGCACATCAGAGGTCTGGGCGTGCCGGAAGAACTCAACCAGGGAAATGCTTTAGACTTTATACAGAGAGAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCAGAAATTTTAAGATCAAATCTTGCCAATACAGTTCTTACTTTGAAGAAACTAGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCGCCTGCTCCTGAGACATTAATGCGTGCATTGGAAGTGTTGAATTACTTGGGTGCACTGGATGATGATGGTAACTTAACTAAGCTGGGTGAGATTATGAGTGAATTTCCCTTGGATCCACAGATGTCGAAGATGCTTGTTGTCAGTCCTGAATTCAACTGTTCAAATGAGATTCTGTCAATTTCTGCCATGCTGTCAGGTTGTCATCAGCAACTGTCTTCTCTGGGTTCCATGCCCCCGGTTGGCATGCACCATAGGATTCTAATACCCAATTGCTTTGTCCGGCCTAGGGAGGCTCAAAAAGCTGCGGATGAAGCTAAAGCTAGGTTTGGGCACATTGATGGAGATCATCTGACGCTGTTGAATGTCTATCACGCATACAAGCAAAATAATGAGGATCCCTCTTGGTGCTATGATAACTTTGTTAATCATAGGGCATTGAAATCAGCTGATAATGTTAGACAACAGTTAGTGCGTATCATGGCCCGGTTTAATCTGAAGCAATGCAGCACTGACTTTAATAGTCGCGACTATTATGTCAACATAAGAAAAGCTATGCTAGCTGGGTATTTCATGCAGGTAGCTCACTTGGAGCGTACAGGACACTACTTGACGGTGAAAGACAACCAGGTGGTGCATTTGCATCCATCAAATTGCCTGGACCACAAGCCTGAATGGGTAATTTATAACGAATATGTTCTTACCAGTCGGAATTTTATTCGTACTGTTACAGACATACGAGGGGAATGGTTGGTTGATGTAGCACCACATTACTATGATTTGTCTAATTTCCCCCAATGTGAGGCAAAGCGTGTTCTAGAGAAACTTTACAAGAAGCGAGAAAAGGAGGAGGAAACCCGGAGTCGCAGATAA 2238 0.437 MGTERKRKVSLFDVVDDSLAKKAKSNGGANNSVANALINRWNARPYSQRYFDILEKRKTLPVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISNLGDQVGPVKVVPLYSTLPPAMQQKIFEAPPPPLKEGGIPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSGCHQQLSSLGSMPPVGMHHRILIPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKQCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDVAPHYYDLSNFPQCEAKRVLEKLYKKREKEEETRSRR 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02811 745 PANTHER ATP-DEPENDENT RNA HELICASE 47 718 - -
Vian2g02811 745 Gene3D - 9 241 IPR027417 -
Vian2g02811 745 FunFam Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 14 241 - -
Vian2g02811 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 264 444 IPR001650 -
Vian2g02811 745 SMART ha2_5 464 576 IPR007502 GO:0004386
Vian2g02811 745 FunFam Predicted protein 254 423 - -
Vian2g02811 745 CDD SF2_C_RHA 243 411 - -
Vian2g02811 745 Gene3D - 449 626 - -
Vian2g02811 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 628 IPR027417 -
Vian2g02811 745 Pfam Helicase conserved C-terminal domain 270 402 IPR001650 -
Vian2g02811 745 Gene3D - 242 424 IPR027417 -
Vian2g02811 745 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 637 713 IPR011709 -
Vian2g02811 745 SMART helicmild6 285 403 IPR001650 -
Vian2g02811 745 Pfam Helicase associated domain (HA2) 465 575 IPR007502 GO:0004386
Vian2g02811 745 CDD DEXHc_DHX15 48 238 IPR044756 GO:0003724|GO:0005524
Vian2g02811 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 239 IPR014001 -
Vian2g02811 745 SMART ultradead3 57 248 IPR014001 -
Vian2g02811 745 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 448 533 - -
Vian2g02811 745 Pfam DEAD/DEAH box helicase 66 224 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02811 Vian-Chr2 49024492 49028365 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02811 K12820 - gmx:100807162 1343.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02811 2 49024492 49028365 Vian2g02811 2 49024492 49028365 ECH