Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02797 ATGGGGAAACCAAGGTTGCAGGGTAAGGTGGCCATTGTCACCGGCGGAGCCACCGGAATAGGAGCGGAAGCAGTGAGGATATTCGTGGAAAACGGAGCATTTGTGGTCATAGCAGACATAAAGGACGAACTGGGTCACAGTTTGGCAACTTCGTTTGGCTCAGACAAAGTGAGTTATCGGCACTGTGACGTGAGAGACGAGAATGAAGTTGCAAAAACAGTGGAATTCACAGTAGACAAATATAACAGCTTAGACATCATGTTCAGCAACGCTGGCATCGCAGGATCTTATTCATCCATACTAGATTTGGATCTCAAAGAATTCGACAACACCATGGCCATTAACGTTCGTGGGGTAGCCGCAACCATCAAGCACGCGGCACGTGTCATGGTTGCTAGAAAAATTCGTGGATCCATAATTTGCACTGCCAGTGTGGCTGCTTCCTTCGCGGGAGGCGCGGGTCACGAATACACCGTATCAAAACACGGCGTTCTTGGGCTTGTTCGGTCGGCGTGCGGCGAGCTTGGAGCTTATGGGATAAGAGTGAATTCCATCTCGCCTTATGCACTTGCCACGCCTATGACTTGCGCCGCACTCGATGTGGGACCTGCTGAAGTTGAAGCTGCAGCATATGGTTCTGCGAATTTGGAGGGAATTACGTTGAAGGCTAACCATATTGCGGAAGCTGCTCTGTTTCTTGCTTCTGATGAATCGCTTTATATCAGTGGCCACAACTTGGTCGTCGATGGAGGTTACTCCGCCGTCAATCGCTGGCTTCCTAGGATTCAAAAGTAA 795 0.4981 MGKPRLQGKVAIVTGGATGIGAEAVRIFVENGAFVVIADIKDELGHSLATSFGSDKVSYRHCDVRDENEVAKTVEFTVDKYNSLDIMFSNAGIAGSYSSILDLDLKEFDNTMAINVRGVAATIKHAARVMVARKIRGSIICTASVAASFAGGAGHEYTVSKHGVLGLVRSACGELGAYGIRVNSISPYALATPMTCAALDVGPAEVEAAAYGSANLEGITLKANHIAEAALFLASDESLYISGHNLVVDGGYSAVNRWLPRIQK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02797 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 255 IPR036291 -
Vian2g02797 264 FunFam Short-chain dehydrogenase reductase 1 257 - -
Vian2g02797 264 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Vian2g02797 264 Gene3D - 1 258 - -
Vian2g02797 264 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Vian2g02797 264 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Vian2g02797 264 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Vian2g02797 264 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Vian2g02797 264 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Vian2g02797 264 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Vian2g02797 264 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
Vian2g02797 264 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 4 257 - -
Vian2g02797 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Vian2g02797 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Vian2g02797 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02797 Vian-Chr2 48880677 48881545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02797 6 251 Acyl Lipid Metabolism Gene Families AT3G55290 30.000 1.54e-22 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02797 - - gmx:100798299 391.349