Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02796 ATGTCGAAACAAAGGTTGCAGGGTAAGGTGGCCATTGTCACCGGCGGAGCCACCGGAATAGGAGCGGAAGCAGTGAGGATATTCGTGGAAAACGGAGCATCTGTGGTGATAGCAGACATAAAGGACGAACTGGGTCACAGTTTGGCAACTTCGTTTGGCTCAGAAAAAGTGAGTTATCGGCACTGTGACGTGAGAGACGAGAATGAAGTTGAAGAGACAGTGGCTTTCACAGTAGAGAAATATAGCAGCTTAGACATCCTGTTCAGCAACGCTGGCATCGCAGGACCCTATTCATCCTTACTGGATCTGGATCTCAACGAATTTGACAACACCATGGCCATTAACGTTCGTGGGGTAGCCGCAACCATCAAGCACGCGGCACGCGTCATGGTTGCTAAAAAAATCCGTGGATCCATAATTTGCACTGCCAGCGTGGCTTCGTCCGTCGGGGGAAGCGCGGGTCATGAGTACACCGTATCCAAACACGGCGTTCTTGGGCTTGTTCGGTCGGCGTGCGGCGAGTTTGGAGCTTATGGAATAAGAGTGAATTCCGTCTCGCCTTATGCACTTGCCTCGCCTCTTACTTGCGACGCACTCGATTGGGGACCTGCTGAAGTTGATGCTGCGCAACATGGTTCTGCGAATTTGGAGGGGATTACGTTGAAGGCTAATCATATTGCGGAAGCTGCTCTGTTTCTTGCTTCTGATGAATCGCTTTATATCAGTGGCCACAACTTGGTCGTCGATGGAGGTTTCACCGCCGTTAATCGTTGGCTTCCTAGGATTCAAAAGTAA 795 0.5057 MSKQRLQGKVAIVTGGATGIGAEAVRIFVENGASVVIADIKDELGHSLATSFGSEKVSYRHCDVRDENEVEETVAFTVEKYSSLDILFSNAGIAGPYSSLLDLDLNEFDNTMAINVRGVAATIKHAARVMVAKKIRGSIICTASVASSVGGSAGHEYTVSKHGVLGLVRSACGEFGAYGIRVNSVSPYALASPLTCDALDWGPAEVDAAQHGSANLEGITLKANHIAEAALFLASDESLYISGHNLVVDGGFTAVNRWLPRIQK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02796 264 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Vian2g02796 264 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Vian2g02796 264 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Vian2g02796 264 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Vian2g02796 264 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Vian2g02796 264 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Vian2g02796 264 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Vian2g02796 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 255 IPR036291 -
Vian2g02796 264 FunFam Short-chain dehydrogenase reductase 1 257 - -
Vian2g02796 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Vian2g02796 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Vian2g02796 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Vian2g02796 264 Gene3D - 1 260 - -
Vian2g02796 264 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
Vian2g02796 264 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02796 Vian-Chr2 48872748 48873619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02796 6 253 Acyl Lipid Metabolism Gene Families AT3G55290 29.771 2.75e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02796 - - gmx:100798299 394.045