Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02792 ATGGATTCGGCGAACGGAGCAATGGCTGTGAGAGACCAAAACTTAACGGAATGGCGCATGCACCGTGGTCCCTACCTGGGAGACATTTCAGCTCTGTGTTTTCTCCACCTTCCAAATCTCTCTCTCCCTTTTCTGCTCGCGGGTTTGGGTTCAGAAATTGCGGTCTATGATTTGGAACTGAGTAAGAGAATAAGGTCCTTCTCCGTATTCGAAGGAGTTCGCGTCCACGGAATCGCTTCTAGTTTCCCTCGCGGGACCATGATTGCTGTGTTTGGGGAAACCAGAGTGAAGCTGTTTAGCTTCGAATTTGATGCCGTTTCCGGGAGCGCAGAGCTGACGCTAGCTCATTTGTTGCCGAAGTTTGGTCACTGGGTTTTGGATGTTTGCTTCCTCGAGGGATGCTTACCTCATTCCAATGTGGAGGGTCATTTTCTTGCTGTGGGATGTAGTGATAATTCAGTTCATGTTTGGGATTTTTCTAACTCCATGGCGGTCCTTAAGGTTCAATCTCCAGTACGGTGCCTTCTGTACTCAATGCGATTATGGGGTCACAATCTTGAAGTTCTCCGAATAGCTTCTGGTACTATATTTAATGAGCTAAAGGATAAACTGTTTGAGGCTACTCATATATGTAAACTTATTGGACATGAAGGTTCAATCTTCCGAATAGCATGGTCATCTTGTGGATCTAAACTGGTATCTGTCTCTGATGACCGGAGTGCACGTGTTTGGGCTGTTTCTATTGAAGGGGAGCATGCATTGTGCCACAATTCCACTGCCCTTGTCTTATTTGGACATAATGCTCGGGTTTGGGACTGCTCTATTTCTGATAATTTGTTTGTCACTGTTAGTGAGGATTGTACATGTCGTATTTGGGGAGTGGACGGTAAACAACTGCAAGTCATTAAGGAGCACATTGGAAGAGGTATATGGAGATGTTTGTATGACCCAAATTCATCACTGCTTATAACTGCTGGGTTTGACTCTGCTATTAAAGTACATCAACCTCATGCATCTCTGCCCATGGGCTTGGAAGCAGTACAAGGATCCCCTTGTAGTACAGAGTTGTTTTCGATTTGCACACCTAATGTGTCAGAGCATATTGGATTTATGGACAGCAAGAGTGAATATGTTCGATGTTTGCGCTTTTCCTGTCAGGATTCTCTTTATGTTGCCACCAATCAGGGTTATCTCTACCATGCTAAATTATGTGATACTGGAGGTGCTCAGTGGAATCAACTTGTCCAGGTCAGCAATGGGGCACCAATTATCTGTATGGATTTATTGTCCAAGAACTCTGTTGAACATGACTGTGGTGCTGAGGATTGGATTGCTATCGGAGATGGTAAAGGAAATATGACAATTATTGAGGTTACCAAGGATGATTGCACTCCTACAGTGAGATTGTGCTTTACTTGGCCAGCTGAAACGGAGAGACAGCTCTTGGGTACTTATTGGTGCAAATCTCTGGGATGTAGGTATGTCTTCACAGCTGATCCTAGAGGAACATTGAAACTTTGGAGATTGCCTGACCCTTCACAATCTGATCTTCAGAGCTCCACGAGCAGTAACAAATTATCACTTATAGCAGAGTTCATATCAAATTATGGAATGCGGATAATGTGTTTGGATGCATGCATGGAGGAAGAGGTTTTAGCATGTGGTGATGTGCGGGGTAATATGGTTTTGTTCCCTTTGCTAAAGAATCTGGTCCTGAGCATATCTGGTGCAGAAGAAAGGAAGATACCTCCAGTAAATAATTTCAAAGGAGTTCATGGGATTTCAAGTGTCTCCAGTGTTTCTGTGACTAAGCTTGGTTATAATCAGATAGAGATACGCTCAACCGGAGCAGATGGTTGCATATGTTATCTGGAATATGACAAAGAAATGCATAATTTGCAATTTACGGGAATGAAACAAGTTAAAGAATTGTCTTTGATTGAGTATGTTTCTGTGGATAACAAGTCTGGTGATAGATTGTCAAGCAGCTATGCAGCTGGTTTTGCATCTGTGGATTTCATAGTATGGAACTTAGTGAACGAAAATAAGGTGGTGAACATTCCATGTGGTGGATGGCGACGTCCTCATTCCTATTATTTGGGTGATATACCAGAGATGAAGAACTGCTTTGCCTTTGTCAAGGATGAATTGATACATATACATAGACACTGGATTCATAATAGAGATGGGAAGGTTTACCCTCAAAATTTACACACGCAATTCCATGGTAGAGAAATACATTCCTTGTGCTTTATCTCTGAAGATGTCGTAATTGGAGATAATTTCAAGTGCACCTTATTTTCTAAATCAAGTTGGATTGCAACTGGATGTGAGGATGGAACTGTGAGGTTGACTTGGTACTCTCCAGGCACTGAAAATTGGTCCATGTCAAAACTGCTTGGAGAACATGTTGGAGGGTCAGCAGTGAGATCAATTTGTTGTGTGTCGAAAGTACACACAATTTCATCAGATATGGGTGATGTACCTGATGGGAGGATTGAACTGAATGCTGCGGTTGAGAAAAAGGATAATCCAACATTACTCATATCAGTGGGTGCAAAGCGTGTCTTAACCTCTTGGTTATTAAAAAATACTGGGCTGGACATAAAAAATGATTTCATAATCAATCATCAACACAAATCAGGAGATGATGACTGTTTTTTGTCAAGTTTGTCTTCGTCAATGACGTTCCAGTGGCTGTCCACTGATATGCCAGCCAAATATTCAATTACACACAAAAGTAATGTGCAGAAGATAGCTGGTGTTGCAGAAAATGTTCCTCATACAAATAATGATGCTGGAATGATTTCTGAGAGTGGAATGGCAAACTTGATCAGAGATAAACATGAAGATGACTGGAGATATCTTGCAGTCACAGCTTTTCTTGTTAGATGTTTCGGTTCCAGGATATCTGTTTGTTTTGTTGTTGTTGCATGTTCAGATGCCACACTTATGTTACGGGCTTTAGTTTTACCATTTCGCTTGTGGTTTGATGTCGCTTTACTAGTTCCTTTATTGGCACCAGTTTTGTCATTGCAGCATATCATATTTCCCCTGTGTAGGCCTTGTAAAGAAAACATCCAAGCTGGAAATGTTTATATTGTGATTAGTGGGTCTACTGATGGCAGTGTTGCTTTTTGGGACCTAACTGACAGTGTTGAAGCTTTTATGCAACGGGTTTCAGTTTGTAATGTTGAAAAGCTTTTTGATTGTCAAAAGCGACCACGCACGGGGAGAGGAAGTCAGGGTGGTAGACAGTGGAGGTCATTACGCAGAGACTTGTCAAAGAAAAGACAAGAAAGCAGTCTGGTCACTTTGAAAGCCAAAGAGAAGACCGAAAAGGGGGTGCCAAGTGATTCTGAAGGCAGCAGGACGGGTTGTTCTCAATCCACACATATGGCTCTCCTGGAGTTAGAAAGCAAGACTGATAATTCCTCGATAGAAATATGTGAAATACAACCTCTATTCCTGCAAAATATTCACCAATCTGGTGTCAATTGTCTCCATGTTTCAGAGATAAAGAGTGGGCAAAATACTGACTGTTGTGAAATGTACAGCATAGTTAGTGGGGGTGATGATCAAGCACTTAATCATCTAATGGTTGAATTATCACCTAAATCAATAAATTTAAATGACGGGATTTTGTGCCCTGAGATCACTCATATTGCCTCTGTGCCTGAATATGGAAAGGACTTCAACGTTAAAAATATGAGCAAGAAATTTAAGATTAGATTCTTAAATAACGAAAAATTACCCTCTGCCCACAGTGCTTCCGTCAAAGACGGATCCTGGGTGTTTTCCACTGGACTTGATCAGCGGGTCAGATGCTGGCGTCTTCAGCGAAGTAAACTAATAGAGTATTCATATCTAATAGTTAGTGTTCCAGAGCCAGAAGCGTTATCTGCTAGGGCTTGTGGCAGGAATCGATATCAAATTGCTGTTGCGGGAAGAGGAATGCAAATAATTGATTTTTCTGAATCTTGA 3984 0.4172 MDSANGAMAVRDQNLTEWRMHRGPYLGDISALCFLHLPNLSLPFLLAGLGSEIAVYDLELSKRIRSFSVFEGVRVHGIASSFPRGTMIAVFGETRVKLFSFEFDAVSGSAELTLAHLLPKFGHWVLDVCFLEGCLPHSNVEGHFLAVGCSDNSVHVWDFSNSMAVLKVQSPVRCLLYSMRLWGHNLEVLRIASGTIFNELKDKLFEATHICKLIGHEGSIFRIAWSSCGSKLVSVSDDRSARVWAVSIEGEHALCHNSTALVLFGHNARVWDCSISDNLFVTVSEDCTCRIWGVDGKQLQVIKEHIGRGIWRCLYDPNSSLLITAGFDSAIKVHQPHASLPMGLEAVQGSPCSTELFSICTPNVSEHIGFMDSKSEYVRCLRFSCQDSLYVATNQGYLYHAKLCDTGGAQWNQLVQVSNGAPIICMDLLSKNSVEHDCGAEDWIAIGDGKGNMTIIEVTKDDCTPTVRLCFTWPAETERQLLGTYWCKSLGCRYVFTADPRGTLKLWRLPDPSQSDLQSSTSSNKLSLIAEFISNYGMRIMCLDACMEEEVLACGDVRGNMVLFPLLKNLVLSISGAEERKIPPVNNFKGVHGISSVSSVSVTKLGYNQIEIRSTGADGCICYLEYDKEMHNLQFTGMKQVKELSLIEYVSVDNKSGDRLSSSYAAGFASVDFIVWNLVNENKVVNIPCGGWRRPHSYYLGDIPEMKNCFAFVKDELIHIHRHWIHNRDGKVYPQNLHTQFHGREIHSLCFISEDVVIGDNFKCTLFSKSSWIATGCEDGTVRLTWYSPGTENWSMSKLLGEHVGGSAVRSICCVSKVHTISSDMGDVPDGRIELNAAVEKKDNPTLLISVGAKRVLTSWLLKNTGLDIKNDFIINHQHKSGDDDCFLSSLSSSMTFQWLSTDMPAKYSITHKSNVQKIAGVAENVPHTNNDAGMISESGMANLIRDKHEDDWRYLAVTAFLVRCFGSRISVCFVVVACSDATLMLRALVLPFRLWFDVALLVPLLAPVLSLQHIIFPLCRPCKENIQAGNVYIVISGSTDGSVAFWDLTDSVEAFMQRVSVCNVEKLFDCQKRPRTGRGSQGGRQWRSLRRDLSKKRQESSLVTLKAKEKTEKGVPSDSEGSRTGCSQSTHMALLELESKTDNSSIEICEIQPLFLQNIHQSGVNCLHVSEIKSGQNTDCCEMYSIVSGGDDQALNHLMVELSPKSINLNDGILCPEITHIASVPEYGKDFNVKNMSKKFKIRFLNNEKLPSAHSASVKDGSWVFSTGLDQRVRCWRLQRSKLIEYSYLIVSVPEPEALSARACGRNRYQIAVAGRGMQIIDFSES 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02792 1327 Gene3D - 11 263 IPR015943 GO:0005515
Vian2g02792 1327 SUPERFAMILY WD40 repeat-like 141 512 IPR036322 GO:0005515
Vian2g02792 1327 Gene3D - 264 570 IPR015943 GO:0005515
Vian2g02792 1327 PANTHER WD REPEAT PROTEIN 22 1326 - -
Vian2g02792 1327 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 244 IPR001680 GO:0005515
Vian2g02792 1327 MobiDBLite consensus disorder prediction 1089 1118 - -
Vian2g02792 1327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 244 - -
Vian2g02792 1327 Pfam WD domain, G-beta repeat 737 784 IPR001680 GO:0005515
Vian2g02792 1327 Pfam WD domain, G-beta repeat 122 158 IPR001680 GO:0005515
Vian2g02792 1327 Pfam WD domain, G-beta repeat 211 244 IPR001680 GO:0005515
Vian2g02792 1327 SUPERFAMILY Calcium-dependent phosphotriesterase 19 247 - -
Vian2g02792 1327 SMART WD40_4 206 245 IPR001680 GO:0005515
Vian2g02792 1327 SMART WD40_4 733 786 IPR001680 GO:0005515
Vian2g02792 1327 SMART WD40_4 466 508 IPR001680 GO:0005515
Vian2g02792 1327 SMART WD40_4 1239 1278 IPR001680 GO:0005515
Vian2g02792 1327 SMART WD40_4 295 335 IPR001680 GO:0005515
Vian2g02792 1327 SMART WD40_4 256 293 IPR001680 GO:0005515
Vian2g02792 1327 SMART WD40_4 111 158 IPR001680 GO:0005515
Vian2g02792 1327 MobiDBLite consensus disorder prediction 1074 1128 - -
Vian2g02792 1327 Gene3D - 1009 1318 IPR015943 GO:0005515
Vian2g02792 1327 ProSiteProfiles Trp-Asp (WD) repeats profile. 1035 1057 IPR001680 GO:0005515
Vian2g02792 1327 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 167 IPR001680 GO:0005515
Vian2g02792 1327 SUPERFAMILY WD40 repeat-like 442 1285 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02792 Vian-Chr2 48839174 48850546 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02792 K24737 - gmx:100780968 2195.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02792 2 48839174 48850546 Vian2g02792 2 48839174 48850546 ECH