Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02782 ATGAGATTTCGTGGGAGCTTTATTTTTCGCCGTTTTCTTTCTCAGTTTCGAAAGCAATTCGATTCAAAATCCGAATTCCCACTTCCGAGTTTCCGGCGCCGAGCTCCGTTCTTCCTTCGTTCTTATTCTTCCGAAGTGCAAGGTCAACTGTCCCCTGAACTCTTGAACATAATGGAACAAAGACTCTCCGCAATTGAGTACCGGACTGCATGTCTCAACAAATTTCTAAATCAGCCAGAAGCATCGCCATCAGAATATGCAAGAGCTAACAAGGAGCTTCGGAAGCTAAGTAGTTCTGTGGACCTTATTAATGAATTGAGGACCAAACAGAAGGAAATTGATGGCTTGAAGTCACTAATGACGGAATGTTCTGAGGATAAAGACATGCTAAATATGGCTACAGAGGAAATGGGTCAGGCCATAGAAGAAGAAAGAAGACTGCAAAATTTGCTGCTGAAGTCATTACTTCCTAAGGATGATGCTAATGGAAGAGATTGCATTTTGGAGGTACGAGCAGGCACTGGAGGGGAGGAGGCTTCCCTGTTTGCAATGGATATCTTTAGAATGTATGAGAAGTATGCTCTCAAGAAAGGCTGGAAATTTGAAGTAGTAGATATAGCTCAATCTGATCTGAAAGGTTACAAGGAGGCTAGTGCAGCAATTGCAGGAGTTGGTGTTTATGGGAAACTAAAATTTGAGAGTGGAATCCATCGTGTCCAGCGAGTTCCTGTGACAGAAAAGTCAGGACGAATTCATACCAGTGCTGTTTCTGTTGCTATTCTTCCTCAGGCTGATGAGGTAGATGTTCAATTGAAGAATGAAGACATAAGAATCGACACCTATAGATCTGGTGGTTCAGGTGGTCAGCATGCAAATACAACGAACAGTGCTGTTAGAGTAACCCACATTCCAACAGGGATTATGATTACTATACAAGATGAGCGGTCTCAACATATGAACAAGGCCAAAGCTCTCAAGGTACTCTGTGCAAAACTATATGAAATGGAAAGGCTAAGACTTCATAGAAGTCGATCAAGGCTTCGATCTGAGCAGATTGGTAGTGGGGACAGATCTGAGCGCATCAGAACATACAATTTTCCTCAGGGCCGGGTAACTGATCACAGAGTTGGTATCACTTATCACTCGGTCGATGATGTGATGCAAGGTGAAAATCTTGACGTCTTCATCGATGCCCTTCTATTGCATGAAGAAATGGATGCAATTGCAACTTTTAGTTCGTCTCAGTAA 1248 0.4279 MRFRGSFIFRRFLSQFRKQFDSKSEFPLPSFRRRAPFFLRSYSSEVQGQLSPELLNIMEQRLSAIEYRTACLNKFLNQPEASPSEYARANKELRKLSSSVDLINELRTKQKEIDGLKSLMTECSEDKDMLNMATEEMGQAIEEERRLQNLLLKSLLPKDDANGRDCILEVRAGTGGEEASLFAMDIFRMYEKYALKKGWKFEVVDIAQSDLKGYKEASAAIAGVGVYGKLKFESGIHRVQRVPVTEKSGRIHTSAVSVAILPQADEVDVQLKNEDIRIDTYRSGGSGGQHANTTNSAVRVTHIPTGIMITIQDERSQHMNKAKALKVLCAKLYEMERLRLHRSRSRLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSVDDVMQGENLDVFIDALLLHEEMDAIATFSSSQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02782 415 Pfam PCRF domain 67 258 IPR005139 GO:0006415
Vian2g02782 415 FunFam Peptide chain release factor 1 162 272 - -
Vian2g02782 415 Gene3D - 264 359 - -
Vian2g02782 415 Pfam RF-1 domain 265 375 IPR000352 GO:0003747|GO:0006415
Vian2g02782 415 NCBIfam peptide chain release factor 1 59 412 IPR004373 GO:0006415|GO:0016149
Vian2g02782 415 SUPERFAMILY Release factor 82 403 IPR045853 -
Vian2g02782 415 Gene3D - 168 396 - -
Vian2g02782 415 PANTHER LD18447P 56 411 - -
Vian2g02782 415 Coils Coil 130 150 - -
Vian2g02782 415 Gene3D - 52 160 - -
Vian2g02782 415 Hamap Peptide chain release factor 1 [prfA]. 58 412 IPR004373 GO:0006415|GO:0016149
Vian2g02782 415 SMART PCRF_a_2 118 233 IPR005139 GO:0006415
Vian2g02782 415 FunFam Peptide chain release factor 1 264 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02782 Vian-Chr2 48762400 48766875 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02782 K02835 - gmx:100800412 711.449