Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02773 ATGAGCACACCTTCAACACACGTGGAAGTGCTTCTGGTACTTGCATTGCTCAGTTGCAGCCCGGGAATAGTATGGAGCAACACACTTTGCCAGCAGACAAACGACGAAGTTCGACCTCACAGCGTCAGCATCACCGAATTTGGTGCAGTTGGTGATGGAGTCACTCTCAACACAAAAGCATTTCAAAATGCCATCTTCTACCTGAATTCCTTTGCTGACAAAGGTGGAGCCAAGCTTTTTGTTCCGGCTGGTAGGTGGCTAACCGGTAGTTTTGATCTCATCAGTCATCTGACTTTGTGGTTGGACAAGGATGCAGTAATTCTCGGATCAACGAACCCTGAAGATTGGCCAGTTGTTGATCCTCTACCGTCGTATGGAAGAGGAAGAGAGTTACCAGGCAGAAGGCATAAAAGCCTCGTTTATGGGCGCAATTTGACTGATGTGATCATAACAGGTAATAATGGAACTATCGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAGGAACAAAACTCTGGATTATACACGTCCCCATTTGATAGAATTGATGAACTCAACAGGGGTCCTCATTTCAAATTTAACCTTGTTGAATTCTCCATTTTGGACAGTCCATCCTGTGTATTGCAGCCATGTTACAGTTCAGAAAGTGGCGATCTTTGCTCCTCTTGATTCTCCAAATACCGATGGGATTGATCCGGATTCTTCTGACAACGTTTGCATTGAGGACTGTTACATAAGCACTGGTGATGATCTGATTGCAATCAAGAGCGGGTGGGATGAGTATGGCATTGCATACGGTCGTCCGTGCACAAACATTGTCATCCACAGGCTTGTTGGTAAAACTCAAACGAGTGCAGGGATTGCAATAGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGTAGAAGATGTTCAATTCTACGATTCAAATACTGCAATCAGAATAAAGACTTCTCCTGGAAGGGGTGGTTATGTCAGAAACATCTATGTCTCAAATGTGACCTTGATTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGGGAACATCCAAATGATGCTTATGATCCAAATGCTCTGCCTGTAATAGAAAAGATTACAATCAAGGATGTGGTGGGAGAGAATATAAAAACTGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTCAACGTTTGCCTATCAAACATTGTCCTTAATGTGAGCTCAAACTATCCATGGAACTGCTCCTATGTTAAAGGATATTCCGACTTGGTTCTGCCAGAAGCTTGTGAGCCTCTCAAAGAAAGGATTTTCCCTGAGCATTGTTCAGATTGTTACTATATGTCAAATCAAATTCAGAGTTCGAAAGGCCAAAATAGAGGTGCTTGGTTTATGTCTTGGTAA 1398 0.427 MSTPSTHVEVLLVLALLSCSPGIVWSNTLCQQTNDEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGRRHKSLVYGRNLTDVIITGNNGTIDGQGSIWWSMFRNKTLDYTRPHLIELMNSTGVLISNLTLLNSPFWTVHPVYCSHVTVQKVAIFAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPCTNIVIHRLVGKTQTSAGIAIGSEMSGGVSEVHVEDVQFYDSNTAIRIKTSPGRGGYVRNIYVSNVTLINVDIAIRFTGLYGEHPNDAYDPNALPVIEKITIKDVVGENIKTAGLIEGIEGDNFVNVCLSNIVLNVSSNYPWNCSYVKGYSDLVLPEACEPLKERIFPEHCSDCYYMSNQIQSSKGQNRGAWFMSW 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02773 465 Gene3D - 25 418 IPR012334 -
Vian2g02773 465 SMART pbh1 270 292 IPR006626 -
Vian2g02773 465 SMART pbh1 327 348 IPR006626 -
Vian2g02773 465 SMART pbh1 209 235 IPR006626 -
Vian2g02773 465 SMART pbh1 236 268 IPR006626 -
Vian2g02773 465 SMART pbh1 298 319 IPR006626 -
Vian2g02773 465 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Vian2g02773 465 PANTHER PECTIN LYASE-RELATED 18 451 - -
Vian2g02773 465 SUPERFAMILY Pectin lyase-like 34 431 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02773 Vian-Chr2 48690200 48692955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02773 10 465 Glycoside Hydrolase AT3G62110 67.957 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02773 - - gmx:100782602 850.892