Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02756 ATGGCTTTAACTGGGCTCCCCCTAGCAACCTTCTTCCTACTTCTCTCCGCTTCTTATCTCCAGATTGCTGGGGCGGAAGTTGAGTCGTTGACTGCTCTCAATCTTAATTCTCCAATTCTTAAGAAATCTATTGCTCAACAGGTTAACGAAAATCCTGAGGCAGGATGGGAGGCTGCCATAAATCCTCGTTTCTCCAATTATACAGTTAAACAATTTAAGCGCCTCCTTGGAGCCAAACAAACGCCTAAGAACGTACTCGGAAGTGTACCTGTTATTTCTCATCCCAAATCATTGAAGTTGCCGGTGAACTTTGATGCAAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGACTTTATAAGTGATCCTTATGCTGGTGTGATGACTCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTAGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTTAATATTTCTCTCTCTGTTAATGACCTTCTCGCATGCTGTGGCTTTCTGTGTGGATCTGGGTGTGATGGGGGATATCCCCTTTACGCATGGCGATACTTAGTCCACCATGGTGTTGTCACTGAAGAGTGTGACCCATATTTTGATCAAACTGGCTGTTCTCATCCTGGATGTGAGCCAGCTTATCGGACTCCCAAGTGTGTTAAAAAGTGTGTAAGTGGGAACCAGCTGTGGAAGAAGTCAAAGCACTTTAGTGTCAGTGCCTACAAGGTCAACTCTAATCCCAATGACATCATGGCAGAAGTGTACAAAAATGGGCCAGTTGAGGTCGCATTTACTGTTTATGAGGATTTTGCTCACTACAAGTCAGGAGTTTACAAACACGTCACAGGTTATGTACTCGGCGGTCATGCAGTGAAGCTAATTGGTTGGGGAACAACTGATGATGGGGTTGACTATTGGCTTCTCGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTACTTCAAGATCCGAAGGGGGACAAACGAATGCGGGATTGAAGAGGAGGTAACTGCTGGTTTGCCGTCTACCAAAAACTTCGTAAGAGAGGTGATTGATATGGATGATGGCGCTGCTGTTTCATTCTGA 1104 0.4493 MALTGLPLATFFLLLSASYLQIAGAEVESLTALNLNSPILKKSIAQQVNENPEAGWEAAINPRFSNYTVKQFKRLLGAKQTPKNVLGSVPVISHPKSLKLPVNFDARTAWSQCSTIGRILDFISDPYAGVMTQGHCGSCWAFGAVESLSDRFCIHFDVNISLSVNDLLACCGFLCGSGCDGGYPLYAWRYLVHHGVVTEECDPYFDQTGCSHPGCEPAYRTPKCVKKCVSGNQLWKKSKHFSVSAYKVNSNPNDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHVTGYVLGGHAVKLIGWGTTDDGVDYWLLANQWNREWGDDGYFKIRRGTNECGIEEEVTAGLPSTKNFVREVIDMDDGAAVSF 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02756 367 SMART pept_c1 100 346 IPR000668 GO:0006508|GO:0008234
Vian2g02756 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 50 339 IPR013128 GO:0008234
Vian2g02756 367 Pfam Papain family cysteine protease 130 345 IPR000668 GO:0006508|GO:0008234
Vian2g02756 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 133 144 IPR000169 -
Vian2g02756 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 292 302 IPR025660 -
Vian2g02756 367 PRINTS Papain cysteine protease (C1) family signature 294 304 IPR000668 GO:0006508|GO:0008234
Vian2g02756 367 PRINTS Papain cysteine protease (C1) family signature 310 316 IPR000668 GO:0006508|GO:0008234
Vian2g02756 367 PRINTS Papain cysteine protease (C1) family signature 133 148 IPR000668 GO:0006508|GO:0008234
Vian2g02756 367 CDD Peptidase_C1A_CathepsinB 101 345 - -
Vian2g02756 367 FunFam cathepsin B-like protease 2 33 352 - -
Vian2g02756 367 SUPERFAMILY Cysteine proteinases 46 347 IPR038765 -
Vian2g02756 367 Gene3D Cysteine proteinases 33 353 - -
Vian2g02756 367 Pfam Peptidase family C1 propeptide 41 82 IPR012599 GO:0004197|GO:0050790
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02756 Vian-Chr2 48503043 48508814 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02756 K01363 - gmx:100788988 664.84