Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02732 ATGGGGACTGAAAATCCTGGTCGTCCAACCTTTCCTTCAAGGCCTTCTCCACCGCCTTTTCCTGCTGCACATACAGTGACACCCTTTTCATCAACCGGTTCCGTGGTTGGATCAGAGCCTCCTTCTTTTCGGCCCGCTCCTCCAGCTCCTTCTTCGCAAGCCGCCTCTCCATTTTCCTCAGCAGGACCTGCTGCAGCTGGACCAGGGGCACCCGGTTTTAGACCTGCACCACCAGGGAGGTTCAATGATCCTTCAGTGCCTCCTCCTCCTCAACCATCCAATGCCCCGCTAGCTGCTGGACCCTTTCAGCAGTTTCCGGCACCGCCCTTCCCCCCGACAATGCAGCCACGTGCACCTCCGCCGTCTATGGGACAACAATCAATTCAATCTTCTGCACCTAATCTAGCACCGCCGTTTCCCACGTCTCTTCCAGCTCAGCCACAGATGCCTTTTGTCCCAATGGGATCTCCCCCACCTCAAAGTGCTGCTGCTCCTGCGCACATGGGTTCAAATGTTCCTCCGCACATGGGTTCAAATGTTCCTCCGCGTACATTTCAGCCATCTTTTCCTGGGTACCCGAGTAAGCAGACTGGTCCTGATATGCAAGGTCCACCCATGCATTCCTCTTTCCCTGCTAATCAAGGAAATTTTGGGACTGTTCCACCTGCTGGAGCTTCTCCTTTTTTGTCTCATCAAGGAGGTTATGTTCCATCACTCCAAGTGGCTCCTCCGCCTGGTATCCAGCCAATGCAGCAGCAACCTGGATCTGCGCCCCATATAGGTGCTGTTCAGGGCTTGGCAGAAGACTTCAATGCCCTCACAATGCAAACTCGTCCCGGAACAATGGATCCATTATTTGACCCCAAGGAACTTCCAAGGCCATTGGAAGGTGATATTGAGCCAAAGAATTTGGCTGACATGTATCCCATGAACTGCAATCCCCGGTTTCTACGACTCACGACTAGTGCCGTACCAAGCTCCCAGTCCTTGGCTTCTAGGTGGCACCTTCCACTTGGAGCAGTTGTTTCTCCGCTTGCTGAACCCCCTGATGGGGAAGAGGTGCCTATAGTTAATTTTGCCCCAGCTAGTGTTGTTCGCTGCAGAAGATGTCGCACATATGTGAATCCTTATATGACATTTACAGAAGCAGGAAGAAAGTTCCGTTGCAACGTTTGTACCTTGCTTAACGATGTTCCTAGTGAATATTATGCACAACTAGATGCCACTGGAAAAAGAGTTGATATACATCAACGGCCTGAGCTTACAAAGGGGACTGTGGAATTTGTGGCCCCTGCTGAGTATATGGTGCGGCCTCCTATGCCACCAGTGTATTTCTTCCTCATCGATGTTTCCATATCTGCAGTTAGAAGTGGCATGATTGAGGTTGTGGCCAATACAATCAAGTCATGCTTGGATGAGCTTCCCGGCTTTCCACGTACCCAAATTGGGTTTGCGACTTTTGACAGCACAATACACTTTTATAACATGAAGTCTTCCCTGACTCAACCGCAGATGCTGGTAGTGTCAGATCTGGATGATATATTTATTCCGCTGCCAGATGATCTTCTTGTTAACTTGTCTGAATCAAGAAGTGTGGTAGAAACCTTCCTAGATAGTTTGCCAACGATGTTCCATGACAATGTTAACTTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCATTCATGGTTATGAGTCAACTCGGAGGGAAATTGTTAATATTTCAAAACTCACTCCCATCTCTTGGTGTTGGCCGTTTGAAGTTACGTGGAGATGATTCTCGTGTTTACGGGACTGACAAAGAACATGGACTGAGACTGCCAGAAGATCCATTTTATAAACAAATGGCTGCTGAGTTTTCCAAGTACCAAATATCAGCAAATGTTTATGTATTCAGTGATAAGTACACAGATGTAGCCTCCTTGGGAACTCTGGCAAAATATACTGCTGGTCAAGTGTATTTCTATCCAGCTTTCCAATCAGCTATTCATGGGGATAAATTGAGACATGAATTAAGGAGAGACCTTACCAGAGAAACTGCATGGGAAGCTGTAATGCGTATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACTGATTTGTTAGCACTTCCTGCTGTAGATTGTGATAAAGCCTTTGCTATGCAGTTATCACTTGAAGAGACATTATTGACAACTCAGACAATGTATTTCCAAGTTGCATTGCTTTATACAGCATCTTGCGGGGAAAGGCGAATAAGAGTACACACAATGGCAGTTCCAGTAGTTACGGAGTTGGCAGATATCTATCGTTTGGCTGATAGTGGTGCTATTGTATCGCTGTTAAGTAGGCTAGCAATTGAGAAAACATTATCCCAAAAGTTGGAAGATGCACGGACTGCTGTTCAACTAAGAATTGTGAAAGCCCTTAGGGAATATCGGAATCTTTATTCTGTGCAACATCGCTTGGCCAACAGAATGATATATCCCGACTCTCTAAAGTTCCTAATTTTATATGGATTAGCCCTGTGTAGATCAACAGCTCTACGTGGAGGATATGGTGATGTTCCACTGGATGAACGATGTGCGGCAGGACACATAATGATGACTGTATCAATAAAAGTACTGTTGAAACTTCTCTATCCTAGTTTGATTCGACTTGATGAATATCTTATGAAGGCATCTATGCAGGCTGATGACTTAAAAAGTGTTGAGAGAAGTTTACCTTTGACAGGGGAGAGCTTAGATTCTAGGGGCCTTTATTTGTATGATGACGGTTTCCGGTTCATTATATGGTTTGGTAGGGTGATTTCACCGGACATAGCCAAAAATTTACTTGGACCAGACTTTGCAGCAGAATTATCGAAGACTACACTCAGTGAGCATGACAATGAAATGTCAAGGAGATTGATGAAGTTACTTGAGAAGTTGAGAAATAAAGATCGTGCTTATTACCAGTTATGCCACCTTGTGAGGCAAGGTGAACAGCCCAAAGAAGGATTCCTCTTTCTTTCAAACCTCGTTGAGGACCAGATGGGTGGTAACAGTGGGTACGCTGAATGGATGTTACAGATATCCCGGCAAGTGCAGCAATCATAA 3105 0.4583 MGTENPGRPTFPSRPSPPPFPAAHTVTPFSSTGSVVGSEPPSFRPAPPAPSSQAASPFSSAGPAAAGPGAPGFRPAPPGRFNDPSVPPPPQPSNAPLAAGPFQQFPAPPFPPTMQPRAPPPSMGQQSIQSSAPNLAPPFPTSLPAQPQMPFVPMGSPPPQSAAAPAHMGSNVPPHMGSNVPPRTFQPSFPGYPSKQTGPDMQGPPMHSSFPANQGNFGTVPPAGASPFLSHQGGYVPSLQVAPPPGIQPMQQQPGSAPHIGAVQGLAEDFNALTMQTRPGTMDPLFDPKELPRPLEGDIEPKNLADMYPMNCNPRFLRLTTSAVPSSQSLASRWHLPLGAVVSPLAEPPDGEEVPIVNFAPASVVRCRRCRTYVNPYMTFTEAGRKFRCNVCTLLNDVPSEYYAQLDATGKRVDIHQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVANTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVETFLDSLPTMFHDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNSLPSLGVGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISANVYVFSDKYTDVASLGTLAKYTAGQVYFYPAFQSAIHGDKLRHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTMAVPVVTELADIYRLADSGAIVSLLSRLAIEKTLSQKLEDARTAVQLRIVKALREYRNLYSVQHRLANRMIYPDSLKFLILYGLALCRSTALRGGYGDVPLDERCAAGHIMMTVSIKVLLKLLYPSLIRLDEYLMKASMQADDLKSVERSLPLTGESLDSRGLYLYDDGFRFIIWFGRVISPDIAKNLLGPDFAAELSKTTLSEHDNEMSRRLMKLLEKLRNKDRAYYQLCHLVRQGEQPKEGFLFLSNLVEDQMGGNSGYAEWMLQISRQVQQS 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02732 1034 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 893 1033 IPR036180 -
Vian2g02732 1034 Gene3D Sec23/Sec24 helical domain 765 1031 - -
Vian2g02732 1034 Gene3D - 312 764 - -
Vian2g02732 1034 MobiDBLite consensus disorder prediction 70 119 - -
Vian2g02732 1034 SUPERFAMILY beta-sandwich domain of Sec23/24 106 774 - -
Vian2g02732 1034 CDD Sec24-like 439 680 IPR041742 GO:0006886|GO:0006888|GO:0030127
Vian2g02732 1034 MobiDBLite consensus disorder prediction 137 160 - -
Vian2g02732 1034 FunFam protein transport protein Sec24D isoform X1 441 678 - -
Vian2g02732 1034 PANTHER SEC24-RELATED PROTEIN 161 1031 - -
Vian2g02732 1034 SUPERFAMILY Helical domain of Sec23/24 776 883 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vian2g02732 1034 MobiDBLite consensus disorder prediction 10 24 - -
Vian2g02732 1034 Pfam Sec23/Sec24 zinc finger 365 402 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vian2g02732 1034 Pfam Sec23/Sec24 beta-sandwich domain 681 765 IPR012990 -
Vian2g02732 1034 Pfam Sec23/Sec24 trunk domain 439 675 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vian2g02732 1034 MobiDBLite consensus disorder prediction 181 203 - -
Vian2g02732 1034 MobiDBLite consensus disorder prediction 1 203 - -
Vian2g02732 1034 Gene3D von Willebrand factor, type A domain 441 678 IPR036465 -
Vian2g02732 1034 MobiDBLite consensus disorder prediction 120 136 - -
Vian2g02732 1034 SUPERFAMILY vWA-like 439 678 IPR036465 -
Vian2g02732 1034 SUPERFAMILY Zn-finger domain of Sec23/24 355 438 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vian2g02732 1034 Gene3D - 310 423 - -
Vian2g02732 1034 Gene3D Severin 884 1012 IPR029006 -
Vian2g02732 1034 Pfam Sec23/Sec24 helical domain 776 878 IPR006900 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02732 Vian-Chr2 48262541 48272055 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02732 K14007 - gmx:100791083 1688.32