Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02723 ATGCTAGAGAAACAGCTTAGTGGGCACCGCGTAGATCGCTCAATATGTGCCTGGTTCTGGGACCAAGCCATTTCTCAACCTGGTTCTTTCAAGCAACAACCAGTTATTGCTTCCCCCACGCATTATCTATTCCAAGTTTTTCGCGAGGGAATCACTTTTTTGGCCTGCGCTCAAGTCGAAATGCCCCCATTGATGGCCACTGAGTTCCTTTGTAGGGTAGCTGATGTTCTCAGTGAATATCTTGGGGGATTGAATGAAGACTTGATCAAAGACAACTTTGTCATTGTGTACGAGCTTCTGGATGAGATGATAGACAATGGCTTCCCGCTAACTACAGAGCCTAATATCCTGCGAGAGATGATAGCCCCACCAAATATTGTTAGCAAAGTCCTGAGTGTTGTGACTGGCAGCAGCTCCAATGTGAGTGACACCCTCCCAGGTGCTACTGCATCTCTTGTTCCCTGGAGAACAGCGGACACAAAGTATGCCAGCAATGAAATTTATGTAGATCTTGTAGAAGAAATGGATGCAACAATAAACAGGGACGGAGTTCTGGTGAAATGTGAGATCAACGGTGAGGTTCAAGTGAATTCCCATATCACTGGGCTTCCTGATTTGACTCTTTCGTTTTCAAATCCTTCAATCCTTGATGATGTGAGGTTCCATCCCTGTGTTAGATATCGGCCCTGGGAATCCCATCAATTTCTTTCATTCGTGCCTCCTGATGGGCAGTTTAAGCTCATGAATTACAGAGTTAGAAAATTGAAGAACACCCCGATATATGTAAAGCCACAGTTGACTTCAGATGGTGGAACATGCCGTCTTAGTGTATTGGTTGGAACAAGAAATGATCCTGGAAAGACAATCGATTCCGTAACTGTTCAGTTTCAGCTTCCTTCTTGCATCTTATCAGCTGATCTGACTTCAAATTATGGAATAGTAAACATACTGTCTGACAAGACATGCTCTTGGTCCATTGGTAGGATCCCAAAAGATAAAGCTCCTTCAATGTCAGGAACATTGGTGCTGGAGACTGGATTGGAGCGCCTTCACGTCTTTCCCACATTTCAAGTGGGTTTTAGGATAATGGGTGTTGCCCTCTCTGGTCTGCAAATAGATAAACTGGATCTGAAGACTGTACCCTACCGCTTTTATAAAGGGTTTCGAGCACTTACTCGAGCAGGAGAATTTGAAGTGAGGTCATAA 1206 0.4436 MLEKQLSGHRVDRSICAWFWDQAISQPGSFKQQPVIASPTHYLFQVFREGITFLACAQVEMPPLMATEFLCRVADVLSEYLGGLNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKVLSVVTGSSSNVSDTLPGATASLVPWRTADTKYASNEIYVDLVEEMDATINRDGVLVKCEINGEVQVNSHITGLPDLTLSFSNPSILDDVRFHPCVRYRPWESHQFLSFVPPDGQFKLMNYRVRKLKNTPIYVKPQLTSDGGTCRLSVLVGTRNDPGKTIDSVTVQFQLPSCILSADLTSNYGIVNILSDKTCSWSIGRIPKDKAPSMSGTLVLETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02723 401 CDD AP3_Mu_N 1 128 - -
Vian2g02723 401 Gene3D - 1 128 - -
Vian2g02723 401 Gene3D Mu homology domain, subdomain B 153 396 - -
Vian2g02723 401 SUPERFAMILY SNARE-like 8 128 IPR011012 -
Vian2g02723 401 Gene3D Mu homology domain, subdomain B 258 399 - -
Vian2g02723 401 CDD AP-3_Mu3_Cterm 153 400 - -
Vian2g02723 401 Pfam Adaptor complexes medium subunit family 153 400 IPR028565 -
Vian2g02723 401 ProSiteProfiles Mu homology domain (MHD) profile. 164 400 IPR028565 -
Vian2g02723 401 PRINTS Clathrin coat assembly protein signature 86 113 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vian2g02723 401 PRINTS Clathrin coat assembly protein signature 216 243 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vian2g02723 401 PRINTS Clathrin coat assembly protein signature 323 334 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vian2g02723 401 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 153 400 IPR036168 -
Vian2g02723 401 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 153 173 IPR018240 GO:0006886|GO:0016192|GO:0030131
Vian2g02723 401 PANTHER AP COMPLEX SUBUNIT MU 11 400 - -
Vian2g02723 401 PIRSF AP_complex_mu 1 401 IPR001392 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02723 Vian-Chr2 48156694 48159408 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02723 K12398 - gmx:100799191 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02723 2 48156694 48159408 Vian2g02723 2 48156694 48159408 ECH
Vian2g02723 2 48156694 48159408 Vian3g01466 3 16052093 16054536 PCT