Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02719 ATGGCAGACTTGGAAAATATGCTTCTTGAGGCAGCTGGAAGGACGAGTTCTCCGGTGAGAAAGCGGCACAAGTCTCGGAACTCGAAATCAAAACGTGAGGGTGGTGCGGCATTCTCCGATGGTGGAAGTCATTCTAGAGAAGAAGACTCTGATGAGGGTGCAAACAAGAAACCACAGAGGTATTCATCCCATGTTCCACTGAAGAAGAGATTAGACGTCAGCAGAAGAAGTAGTAATAATAGTAATCGTAATGAGCATGGTGGGGCTGACTTGGAGGATGGAGTTCCCGATAGAGATGGTGGCAGCAGTGATGAATCTGATGTTGGAAGTGATCTCTACAAGAACGAAGACGACAAACAGAAGCTCGCAAATATGACAGAACTTGAACGGGAGATGATTTTGTCTGATAGAGCAACCAAAAAATGTGAAAAGGAATTCAAAGAGAAAATGAGATCGAAGAGGGAAAACAAAAATGCAAGTGCAGAGACTGGTTCTGCAGCAAATTCATCTTATCATCCATCATCTGCCAAGGTTCGTTCATCGGCTAGAAATGCTGAGAGGACGGCCTCCAAGGGAGATGTTCTAAGTGAATTGCGCGCGAAAAGGATGAAGCAACAAATCTTGGACCCTCATGATAAATTGGGAAAGGCTTCAGGATCAGGCTCAAATAGCAAGCAGAAACCTGGGGTCACGGCAAGTCCAAGTAGCTCTAGTCAGAGTGAGAGTGTTATTCGGTCTGACAGTGAAAGAGACTCGTCTGACGATGGTGGATTGGGTGACAGCGATGATGACAAGAACATTCATGAATCAAGGATGCCAACTTTTGAGAACATAAGGGAAATCACCATTAGGAGGTCAAAGCTCGTGAAGTGGTTGAATGAACCATTTTTTGAGGAGTTAATTGTTGGATGTTTTGTGAGAATTGGCATAGGAAAGTCAGAAAGGGGACCTGTTTACAGGCTCTGCACAGTGCAGAGAGTTGATGGAGGTGACCCAAATAAGCATTACAAGGTAGAGAATAGAGTCACTCACAAGTATCTAGTCTGTGTGTGGGGAAGTGAGAACTCTGCTAAAAAGTTTCAGGTGGCTGTAGTTTCAGATTCTGCACCCTTGGAGAGAGAGTTCAGACAGTGGGTTAGAGAAGTTGAAAGAACTTGCAGCCAAATGCCGAGTAAGATGAGTGTGTTGGAGAAGAAGGAGGCCATAAGAAGAACAAGCGCTTATGTTTATTCAGCCGCTACTGTGAAGCAGATGCTAGAGGAGAAAAAATCAGCCCCATCTAGGCCACTGAACATTGCAGTGGAGAAGGATCGTTTGAAGAATCTGTTGGAGGTTGCAAAGTGTAAGAATGATGAAGCAGAGATGGATAGGATCTTGAGAAAGCTCGCGGATTTGGAAGCATCTCGTAAATCCCGGGAGAATGATGCCAAGGCTTTGAGGCTGGCTGAGATGAACAGGAAGAACAAGGTTGAGAACTTCAAGAACTTGTCTGAGCATAAACAGTTGAATGCCAATTTGAAAGCTGGTGAGGAAGGCTATGATCCCTTTTCGAGGAGGTGGACAAGGTCGAGGAATTACTACGGTAAAGATACTGAAAAGAATGAAGATAAAGGAGAAAAGGATGGTGAAGTTAGTAAGGGGGAAGAGAAAGAAGAAACAGCTGTTACAACAAAGATTGGTGTTGAAGTCACAGAATTGGCATTGCAAGCAGCTGCTAATGAAGGGAAGTTGATTGATACCAATGCTCCTGTGGATGGTGGAACAGAATCATACATGCTCCATGATTTCGACTTGCCTATCTCTTTGGCTGAACTCAAGAATTTTGGTGGACCACAGGGACTCAAAAATGGATTTCTGGCAAGGAAACAAAAAATAGAAGAAACAGTTGGGTGCCGGGTTTCTGAGAATGATGGGAGTAGGCATGCACTTACATTAACTATCAGTGACTACAAGAGAAGAAGAGGACTTCTGTGA 1974 0.4422 MADLENMLLEAAGRTSSPVRKRHKSRNSKSKREGGAAFSDGGSHSREEDSDEGANKKPQRYSSHVPLKKRLDVSRRSSNNSNRNEHGGADLEDGVPDRDGGSSDESDVGSDLYKNEDDKQKLANMTELEREMILSDRATKKCEKEFKEKMRSKRENKNASAETGSAANSSYHPSSAKVRSSARNAERTASKGDVLSELRAKRMKQQILDPHDKLGKASGSGSNSKQKPGVTASPSSSSQSESVIRSDSERDSSDDGGLGDSDDDKNIHESRMPTFENIREITIRRSKLVKWLNEPFFEELIVGCFVRIGIGKSERGPVYRLCTVQRVDGGDPNKHYKVENRVTHKYLVCVWGSENSAKKFQVAVVSDSAPLEREFRQWVREVERTCSQMPSKMSVLEKKEAIRRTSAYVYSAATVKQMLEEKKSAPSRPLNIAVEKDRLKNLLEVAKCKNDEAEMDRILRKLADLEASRKSRENDAKALRLAEMNRKNKVENFKNLSEHKQLNANLKAGEEGYDPFSRRWTRSRNYYGKDTEKNEDKGEKDGEVSKGEEKEETAVTTKIGVEVTELALQAAANEGKLIDTNAPVDGGTESYMLHDFDLPISLAELKNFGGPQGLKNGFLARKQKIEETVGCRVSENDGSRHALTLTISDYKRRRGLL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02719 657 Pfam Plus-3 domain 277 382 IPR004343 GO:0003677
Vian2g02719 657 MobiDBLite consensus disorder prediction 1 271 - -
Vian2g02719 657 MobiDBLite consensus disorder prediction 159 183 - -
Vian2g02719 657 SUPERFAMILY Plus3-like 274 403 IPR036128 GO:0003677
Vian2g02719 657 PANTHER UNCHARACTERIZED 208 656 - -
Vian2g02719 657 ProSiteProfiles Plus3 domain profile. 272 407 IPR004343 GO:0003677
Vian2g02719 657 MobiDBLite consensus disorder prediction 528 554 - -
Vian2g02719 657 MobiDBLite consensus disorder prediction 217 243 - -
Vian2g02719 657 MobiDBLite consensus disorder prediction 42 58 - -
Vian2g02719 657 FunFam RNA polymerase-associated protein RTF1 273 405 - -
Vian2g02719 657 Coils Coil 436 482 - -
Vian2g02719 657 SMART rtf1 272 384 IPR004343 GO:0003677
Vian2g02719 657 MobiDBLite consensus disorder prediction 86 158 - -
Vian2g02719 657 MobiDBLite consensus disorder prediction 184 211 - -
Vian2g02719 657 MobiDBLite consensus disorder prediction 244 271 - -
Vian2g02719 657 Gene3D - 272 405 IPR036128 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02719 Vian-Chr2 48135755 48137728 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02719 K15178 - gmx:100793188 1025.77