Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02716 ATGGCAATGACATTTGAAACGGGTCGTTTTCACCTTTCGCGCCCAACGGCCTCAAAGCACTTGTTATTCTCGGCCATTATCAAACGACCAAAACCCGTTTCGCTTCCTTCTTCTCGGTTCTTCCATTGCCGATCGAGACGCCTCGTTTTGACGCAGAGATTCGCATTGAAAGTCTGCGCGGTGAAAGTCGAGCAGAAGAACGTCGCTACGGAATCAGGAGAGTGGGGGAAGGTTTCCGCGGTGCTCTTCGACATGGACGGCGTGCTTTGCAACAGCGAAGAGCCTTCAAGAAAAGCCGGCGTCGATTTGTTTGCCGAGATGGGCGTCGAAGTCATCGTCGACGATTTTGTGCCGTTTACGGGAACAGGAGAAGCTAACTTTTTGGGAGGTGTTGCTTCTGTTAAGGGAGTTAAAGGATTTGACCCAGAAGCTGCCAAAAAAAGGTTCTTTGAAATATATTTAGATAAGTATGCAAAACCAGATTCTGGAATTGGATTTCCGGGTGCCCTTGAACTCATTTCTCAGTGTAAAAGCAAAGGCCTTAAAGTGGCTGTTGCATCTAGTGCTGATCGTGTAAAGGTTGATGCAAATCTAGCTGCTGCTGGTTTACCATTGTCAATGTTCGATGCGATTGTCTCTGCAGATGCTTTCGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCATCGAGAATATTGAATGTGCCCCCCAGTGAGTGTATTGTTATAGAAGATGCGCTAGCTGGAGTGCAGGCTGCCAAAGCTGCGCAAATGAGATGCATAGCTGTAAGGACCTCAATATCAGATGCAGTTTTAGAATCTGCAGAGCCATCATTTATCCGGGATGACATAGGAAGTGTTTCACTTGAGGATATTCTCTTTGGTGGCACTGTTGGATATAATGAGAGGATGCAGGGCTCCGAAACTCTAAATAATTTTGCAGAGTCTTCATCTACTGTGCTTGATGGAGGGTTGCAGGGTTCTCGGCGAGATATACTGAGATATGGAAGTCTGGGCATTGCTATCTCTTGCCTTATCTTCACCTTAAATAACTGGAAGGCAATGCAATATGCTTCTCCAAAAGCTGTTTGGAATCAGTTGTTTGGTGTTGCCCTGCCACCCTTGGAGCAGAAAGATAACTCAAGATATGATAGGATCCAGCAATTTGTGAACTACATTTCTGATCTGGAAAGCAGGGGAAATGCTCAGATAGTTCCAGAATTTCCATCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAATTGTTTTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTGTTGCCAGACTTAGATGCTTTGGAGAAAAAATACAAAGATATGCCATTTGTTGTCGTGGGTGTTCATTCTGCAAAGTTTGATAACGAAAAAGATTCTGAGGCTATTCGCAATGCAGTTTTACGCTATGGAATTTCTCACCCGGTTGTCAACGACGGAGACATGTTTCTTTGGAGGAACTTGGGTATAAGTTCATGGCCAACATTTGCTATAGTTGGCCCTGATGGTAAGCTTCTTGCACAACTAGCAGGAGAGGGTCACAGGAAGGATCTAGATGATTTTGTGGAGGCTGCCCTTCTATATTATGGAAAGCAGAACATGCTGGACAATACGCCAATTTCCTTGAATTTGGAGAAAGATAATGATCCACGCCTGTTGACTTCTCCATTAAAGTTTCCAGGAAAGCTAGCAGTTGATGTCCTTAATAACAGGCTTTTTATTTCTGACAGCAACCATAATCGTATAGTGGTTACTGACCTTGATGGGAATTTTATTGTACAAATCGGGAGCAGTGGGGAGGAAGGTTTGAATGATGGTTCTTTTGATGATGCTACTTTTAACCGACCTCAGGGCCTTGCTTATAATGCAAAGAAAAACATCCTTTATGTTGCAGACACTGAAAACCATGCTCTGAGGGAAATTGATTTTGTTAATGAGAAAGTACGGACCCTTGCTGGAAATGGGACCAAGGGCTCTGATTATGTTGGAGGTGGAAAAGGAGGCACACAGCTTCTCAATTCCCCTTGGGATGTCTGCTTTCATCCATTCGAAGAAACAATTTATATTGCCATGGCTGGCCAACATCAGATTTGGGAGCACAATTTATTAGAGGCAACTTCCAGAGCATTTAGTGGTGATGGCTATGAAAGAAACTTAAATGGATCAAGTTCTACAAACACGTCATTTGCACAACCTTCTGGTCTTTCGTTGTCTCAAGATCTAAGCAAGATCTACATCGCTGATAGTGAGAGTAGTTCAATTCGAGTTGTGGATCTGAAAACAGGAGGATCACAGTTGTTAGCTGGTGGTGACCCAATGTTTGCTGACAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCGGATGTACTTCTTCAACATCCATTGGGGGTTATGTGTGCAAATGATGGTGAAATTTATATCGCAGATAGCTACAATCACAAGATCAAGAAGCTAGATCCAACTAGTAAAAGAGTTAGCACCATTGCAGGAACTGGAAAAGCTGGTTTCAAAGATGGAACGGCTGTAAAAGCTCAGCTCTCTGAACCGGCAGGAATTGTTGAAGGGAACAACGGGAGATTATTTATAGCTGACACAAACAACAGCTTAATTCGATATCTAGATTTAAACGCTGATGAAACTGAACTCCGTACCTTGGAGCTTAAAGGAATTCAGCCTCCTAAACCAAAATCAAGATCTTTTAAACGTCTTAGACGACGAGCATCAGCCGACACAGTGCCAATTCCGATTGATGCCATTTCATCAAATGAGGGAAACTTGTCTATTAAAATATCATTACCAAGCGAGTATCATTTCTCAAAGGAAGCACGCAGTAAATTCAGCGTGGATATTGAACCTGAAGATGCTGTGAATATTGAACCCCTCGATGGATTCCTTAGTCCAGAAGGATCTGCAACTCTTCACTTTAAGAGATCCTCTAACTCTGCTTCAGTGGGAAGAATTAATTGCAAGGTTTACTATTGCAAGGAAGATGAAGTTTGTTTGTACCAGTCTTTGCTGTTTGAGGTCCCCTTCCCAGACGGTGCTTCTAGCCCTGCCAAAGCAGACGTCACTCTCGCACATTTTGTGAAACCCAAAACTTCAACCAGCAACTTACTGGAGACAGTTGTCCGGTGA 3198 0.4312 MAMTFETGRFHLSRPTASKHLLFSAIIKRPKPVSLPSSRFFHCRSRRLVLTQRFALKVCAVKVEQKNVATESGEWGKVSAVLFDMDGVLCNSEEPSRKAGVDLFAEMGVEVIVDDFVPFTGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKYAKPDSGIGFPGALELISQCKSKGLKVAVASSADRVKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAASRILNVPPSECIVIEDALAGVQAAKAAQMRCIAVRTSISDAVLESAEPSFIRDDIGSVSLEDILFGGTVGYNERMQGSETLNNFAESSSTVLDGGLQGSRRDILRYGSLGIAISCLIFTLNNWKAMQYASPKAVWNQLFGVALPPLEQKDNSRYDRIQQFVNYISDLESRGNAQIVPEFPSKLDWLNTAPLQFRRDLKGKIVLLDFWTYCCINCMHVLPDLDALEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMFLWRNLGISSWPTFAIVGPDGKLLAQLAGEGHRKDLDDFVEAALLYYGKQNMLDNTPISLNLEKDNDPRLLTSPLKFPGKLAVDVLNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLNDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNEKVRTLAGNGTKGSDYVGGGKGGTQLLNSPWDVCFHPFEETIYIAMAGQHQIWEHNLLEATSRAFSGDGYERNLNGSSSTNTSFAQPSGLSLSQDLSKIYIADSESSSIRVVDLKTGGSQLLAGGDPMFADNLFKFGDQDGIGSDVLLQHPLGVMCANDGEIYIADSYNHKIKKLDPTSKRVSTIAGTGKAGFKDGTAVKAQLSEPAGIVEGNNGRLFIADTNNSLIRYLDLNADETELRTLELKGIQPPKPKSRSFKRLRRRASADTVPIPIDAISSNEGNLSIKISLPSEYHFSKEARSKFSVDIEPEDAVNIEPLDGFLSPEGSATLHFKRSSNSASVGRINCKVYYCKEDEVCLYQSLLFEVPFPDGASSPAKADVTLAHFVKPKTSTSNLLETVVR 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02716 1065 ProSiteProfiles NHL repeat profile. 812 842 IPR001258 GO:0005515
Vian2g02716 1065 Gene3D - 80 269 IPR023214 -
Vian2g02716 1065 CDD NHL-2_like 614 955 IPR045302 -
Vian2g02716 1065 Gene3D - 791 894 IPR011042 -
Vian2g02716 1065 Gene3D - 549 720 IPR011042 -
Vian2g02716 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 226 246 IPR006439 -
Vian2g02716 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 78 89 IPR006439 -
Vian2g02716 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 208 224 IPR006439 -
Vian2g02716 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 176 189 IPR006439 -
Vian2g02716 1065 Gene3D Putative phosphatase; domain 2 91 162 IPR023198 -
Vian2g02716 1065 FunFam NHL repeat-containing protein 2 561 717 - -
Vian2g02716 1065 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 77 285 - -
Vian2g02716 1065 CDD HAD_BPGM-like 80 266 - -
Vian2g02716 1065 ProSiteProfiles Thioredoxin domain profile. 400 546 IPR013766 -
Vian2g02716 1065 NCBIfam HAD-IA family hydrolase 206 264 IPR006439 -
Vian2g02716 1065 Gene3D Glutaredoxin 377 548 - -
Vian2g02716 1065 SMART LY_2 569 611 IPR000033 -
Vian2g02716 1065 SMART LY_2 741 783 IPR000033 -
Vian2g02716 1065 SUPERFAMILY HAD-like 73 292 IPR036412 -
Vian2g02716 1065 SFLD Haloacid Dehalogenase 77 285 - -
Vian2g02716 1065 Pfam NHL repeat 632 657 IPR001258 GO:0005515
Vian2g02716 1065 Pfam Thioredoxin-like 429 523 IPR012336 -
Vian2g02716 1065 FunFam Chloroplast protein HCF243 792 896 - -
Vian2g02716 1065 SUPERFAMILY Thioredoxin-like 404 542 IPR036249 -
Vian2g02716 1065 Pfam Haloacid dehalogenase-like hydrolase 81 264 IPR041492 -
Vian2g02716 1065 SUPERFAMILY NHL repeat 570 897 - -
Vian2g02716 1065 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 104 1062 - -
Vian2g02716 1065 FunFam NHL repeat-containing protein 2 384 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02716 Vian-Chr2 48044428 48090179 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02716 - - gmx:100795843 1909.03