Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02654 ATGGACGACGAGGTGCGCAAGATCTTCAACAAGTTCGACAAGAACGGCGACGGGAAGATCTCGTCCGCGGAGCTGAGGGAGTTGATGGCGGCGCTGGGATCGAAAACGACCATGGAAGAGGTGCGACGCATGATGGCCGAGCTCGACCGCAACGGCGACGGCTACATTGATTTGAAGGAGTTCGGGGAGTTCCACTGCGGCGGCGGTGGCGGCGACGGGAGGGAGCTCCGGGAGGCGTTCGAGCTGTACGATCTGGACAAGAACGGGCTGATCTCGGCGAAGGAGCTGCACTCCGTGATGCGGAGGCTGGGGGAGAAGTGCTCCCTCAGTGACTGCCGGAGAATGATCGGAAACGTGGATGCCGACGGCGACGGCAGCGTGAATTTCGAGGAGTTCAAGAAGATGATGACGCGCTCGTAG 420 0.6095 MDDEVRKIFNKFDKNGDGKISSAELRELMAALGSKTTMEEVRRMMAELDRNGDGYIDLKEFGEFHCGGGGGDGRELREAFELYDLDKNGLISAKELHSVMRRLGEKCSLSDCRRMIGNVDADGDGSVNFEEFKKMMTRS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02654 139 ProSiteProfiles EF-hand calcium-binding domain profile. 36 70 IPR002048 GO:0005509
Vian2g02654 139 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 75 137 - -
Vian2g02654 139 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Vian2g02654 139 Gene3D - 72 139 - -
Vian2g02654 139 FunFam Calmodulin A 1 66 - -
Vian2g02654 139 CDD EFh 4 61 IPR002048 GO:0005509
Vian2g02654 139 SMART efh_1 4 32 IPR002048 GO:0005509
Vian2g02654 139 SMART efh_1 40 68 IPR002048 GO:0005509
Vian2g02654 139 SMART efh_1 75 103 IPR002048 GO:0005509
Vian2g02654 139 SMART efh_1 111 139 IPR002048 GO:0005509
Vian2g02654 139 CDD EFh 75 137 IPR002048 GO:0005509
Vian2g02654 139 ProSitePatterns EF-hand calcium-binding domain. 120 132 IPR018247 -
Vian2g02654 139 Pfam EF-hand domain pair 75 137 IPR002048 GO:0005509
Vian2g02654 139 Pfam EF-hand domain pair 4 62 IPR002048 GO:0005509
Vian2g02654 139 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Vian2g02654 139 SUPERFAMILY EF-hand 3 138 IPR011992 -
Vian2g02654 139 ProSiteProfiles EF-hand calcium-binding domain profile. 107 139 IPR002048 GO:0005509
Vian2g02654 139 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Vian2g02654 139 Gene3D - 1 67 - -
Vian2g02654 139 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Vian2g02654 139 FunFam Probable calcium-binding protein CML27 69 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02654 Vian-Chr2 47355221 47355640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02654 3 136 EF-hand Containing Proteins AT1G66400 55.072 4.37e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02654 K13448 - gmx:100806813 239.58