Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02652 ATGGAAGAAAGCCCTCGAGCTAGCAGAAAGCGAAGCCATCCCTTTTCTTCTTCTTCTCCTTCTCCTCCACCTACCAAGCGCCCCAATTTCCCTTCCTTCCAAGACATCCCCAACCTTCCTTCCAACATCAAATCCCTCTGTCACCTCATTGCCACTACCTCCGCCGCCGCCATCGAGCACGCCCTCGAAGGCGCCGCAGTCGTCATCACCCCTCACGACGTCGAGGAAGTCCTCAGACTCTCCTACGGCTTCCCAGGCCAGGCCGTCAAATTCTTCCGGTGGAGCGGCCGCCAACTCCACAACAACCACACTCCTTATTCCTGGAACCTCGTGGTCGACCTCTTGGGCAAGAATCGCTTCTTCGACGCGATGTGGGACGCTATTAAGTCAATGCAGAAAGAAGGGCTACTCTCGCTGGCCACGTTTGCCTCTGTCTTCGAGAGCTATGTCATCGTCAACAGAACCCGGGAAGCGATTATGGCTTTTGAGGTTATGGAGAATTACGGTTGTGTGAGGGACGTGATTGCTTTGAACTCATTGTTGAGTGCAATTTGTAGGGATGGTAGGACAGTTGATGCTTGTGATTACTTGCAGATTGCAAAGAAATTTGTCCGGCCGGATGCCGATTCTTACGCGATTTTGATGGAAGGATGGGAGGGAGAAGGAGATAAGGGTGTGTTTGGTGCGAAGGAGACTTTTGCTGAGATGGTGATTGAGATTGGATGGGATCCTGCCAATGTGCCTGCTTATGATTCATTCCTGTGTGCCCTTGTTAGAGGGCCTGATGGATTGCTAGAGGCTATTAAGTTTGTTGATTCAATGAGGGATAGGAGGTGTTACCCTGGTGTGAGGTTCTTGAAGGTTGCATTGGATGAGTGTATCAAGTTTCATGATGCTAGGACTGCAAAGTTTTTCTGGGAGGTGTTGGTGGAGGTGGGGAGGGTGTTGCAACCCACCACGGAGATGTACAATTTGATGATTGCTTTGTTTTGTTATTGTGGTGATACTGATGATGCGAGGAGGATGCTTGATGAAATGGTTTTCCGAGGGGCCTTTCCTGATGTGGCGACTTATAATTTGCTGTTTAAGTTCTTGATCAAGGGGAGGAAATTGAGAGAGGCGTCTGCAGTGTTTGCTGAGATGGTGAAGAACGAGTTTGTGCCGGATCAGGATAACTGTGATGCGGCGGTTAAGGTATATGTGCATGGTGGGGAGCCTCTTTTGGCGATGAAGGTTTGGAAGTGTTTGGTTGAGAATTATCAGAGTGATTTGGAGCGGACAGCGAATTTTCTGGTTGTGGGGCTTCGTGATTTGAATAGGGTTCCGGAGGCGGTTAAGTATGCTGAGGATATGATTGGAAGAGGAATCAGGTTGTCCTCTTCCACACTGTCAAAACTGAGACAAACCCTTGTCAAGGAAAGAAAGGAATTTGTGTATGAAGAACTTTTGAGAAAGTGCAATTCTCAATAA 1470 0.4871 MEESPRASRKRSHPFSSSSPSPPPTKRPNFPSFQDIPNLPSNIKSLCHLIATTSAAAIEHALEGAAVVITPHDVEEVLRLSYGFPGQAVKFFRWSGRQLHNNHTPYSWNLVVDLLGKNRFFDAMWDAIKSMQKEGLLSLATFASVFESYVIVNRTREAIMAFEVMENYGCVRDVIALNSLLSAICRDGRTVDACDYLQIAKKFVRPDADSYAILMEGWEGEGDKGVFGAKETFAEMVIEIGWDPANVPAYDSFLCALVRGPDGLLEAIKFVDSMRDRRCYPGVRFLKVALDECIKFHDARTAKFFWEVLVEVGRVLQPTTEMYNLMIALFCYCGDTDDARRMLDEMVFRGAFPDVATYNLLFKFLIKGRKLREASAVFAEMVKNEFVPDQDNCDAAVKVYVHGGEPLLAMKVWKCLVENYQSDLERTANFLVVGLRDLNRVPEAVKYAEDMIGRGIRLSSSTLSKLRQTLVKERKEFVYEELLRKCNSQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02652 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Vian2g02652 489 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 229 472 - -
Vian2g02652 489 Pfam PPR repeat 106 136 IPR002885 -
Vian2g02652 489 NCBIfam pentatricopeptide repeat 322 355 IPR002885 -
Vian2g02652 489 NCBIfam pentatricopeptide repeat 106 136 IPR002885 -
Vian2g02652 489 NCBIfam pentatricopeptide repeat 357 389 IPR002885 -
Vian2g02652 489 MobiDBLite consensus disorder prediction 1 34 - -
Vian2g02652 489 Pfam PPR repeat family 318 365 IPR002885 -
Vian2g02652 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Vian2g02652 489 Gene3D Tetratricopeptide repeat domain 81 227 IPR011990 GO:0005515
Vian2g02652 489 Gene3D Tetratricopeptide repeat domain 249 421 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02652 Vian-Chr2 47331824 47333293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02652 154 485 Glycosyltransferase AT1G05670 25.000 4.50e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02652 - - vun:114191149 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02652 2 47331824 47333293 Vian2g02652 2 47331824 47333293 ECH