Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02640 ATGCCATTCATCTCCAAAATTCAGCGCCAATCTGATTACACTCTCTTCAGCTCCGCCACTCCCATTGTCATCGACAATGGTGCCTCCTATTTCCGTATTGGATGGGCTGGAGAGACTCAACCTCGTGTTGTTTTCCGCAGCATTGTCCAACGGCCACGCCACAAAGCCACTGGAGAAATTGTCACTATTGTTGGTGACCATGATCCAGCATTAATGAAATACTTTGACTGTAGTCGCTCTGGACCTCGCTCAGCATTTGACAGCAATGTAGTTTACCAATTTGAAATGATGGAATATATTTTGGACTTTGGATTTGACAGGTTGGGAGCAACAGGATCAGAGATTGATCATCCTGTCCTGATCACTGAATGTGTATGCAACCCAATTCAGTCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACATATGGAGTTCCATCTATAGCCTTTGGTGTTGATGCGGCATTCAGCTACAAATATAATCAACAACATGGTGTTTGTGATAAAGATGGCCTTGCTTTGTGTCCTGGATTCAATACAACTCATGTGATTCCGTTTGTGGATGGGGAGCCTATATATAAAGGATGTTGCCGAACCAATGTTGGTGGGTTCCATGTCACTGATTATTTAAAGCAACTTCTTTCACTGAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGACGACCTGAAGATGGAACATTGTTATATTGCACCAGATTATGCTTCTGAAGCTCGACTGTTTCAGAAAAAATCTAAGGAGGCTAAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGATTCCACCCCCTACGGAGGAGCCTCCTTCTGAAGAAGAGATTGCTAGAAAGGCAGCAATAAGAGAGAGACAGGGTCAAAGATTACGTGAAATGGCTGAGGCAAAGAGGTCCTCTAGAATAAACGAATTGGAAAATGAATTGCATGGTTTGGAATTTCTTCTAAAACAGCTTGAACAAGTTGAAGACAGTGATATTCCGTCTTTCCTATCAGAGACTGGTTATGTCTCTAGGCAGGAGATAGAATCTGCCCGCATTAAAGTTACTCAATCTTTACGTAAAGCAAAAGGTGAACCAAAGAGTGAACAAGCTGAAACCGAAAAAGCTGACTCTGGCATTAATGAAAAGTATTCTCTTATAAACATCCCTGACGACATGCTCTCCCCTGAACAGCTAGTTGAAAAAAAGAAACAGCTGTCACTCAAATCCATGTCAGATGGACGACAGAGAATGAAGCAGAAGCGTTATGAAGAGGAATTGGAGCGAGAAAGGAAACAACAGTTAGAGGAGGAAAAACGCCTAGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAGTACAAAGACCTTTCAGAGAAAGTTGACCAGAGAAAACGGCTCAAGACAAACGGAGATCATTCCAATGGAAATAACTTGTCTGGTGGCATTGGTCGTGGTGAGAGACTCAGTGCTTCTCAGAGGGAGAGAATGCGGCTCTTAACAACTGCTGCCTTTGATCGTGGTAAGGATGAAGATACATTCGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTAATGAGTAAAGATAATGATGATGGTGACGAGGGACCAGATGAGGATGACACTGAGCTAGCTCGCATCTCTTCCAAGCTGCAGGACTTGGATCCAACATTCGTGCCCAAGCCAGAAACTGGTAGCTCTCAACCTGCTGAGGCGTCACGTGGTCGTTCTTTAACCAAAGAAGATTTTCAAATTGTTATCGGTGTGGAAAGGTTCCGATGCCCTGAAATTTTGTTCAATCCAAACTGGATGGCAGTTGATCAAGCAGGGCTAGATGAGATGGCTGGGGTGTCAATAAGAAGGTTATCGTGTAAGGATGAAGAGCTGGAAAAGAGACTGACAAGCTCCATACTTGTGACTGGTGGAAGTTCTATTTTCCCCGGCATGATTGAACGGCTTGAAGCCGGAATTAGGATGATTCGACCATGTGGATCACCCATTAAGGTTGTCAGAGCATTGGATCCTATTATGGATGCATGGCGTGGTGCTGCTGCATATGCAACAATCCCACAATTCCATTCTCAAACCTTCAGTAGGATGGACTATTTTGAAAAGGGTGAAGACTGGCTCCGCAGTTATCAACTAAAATATTCATTGTAA 2169 0.4325 MPFISKIQRQSDYTLFSSATPIVIDNGASYFRIGWAGETQPRVVFRSIVQRPRHKATGEIVTIVGDHDPALMKYFDCSRSGPRSAFDSNVVYQFEMMEYILDFGFDRLGATGSEIDHPVLITECVCNPIQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQHGVCDKDGLALCPGFNTTHVIPFVDGEPIYKGCCRTNVGGFHVTDYLKQLLSLKYPYHMARFTWEKVDDLKMEHCYIAPDYASEARLFQKKSKEAKEKTRCWQLPWIPPPTEEPPSEEEIARKAAIRERQGQRLREMAEAKRSSRINELENELHGLEFLLKQLEQVEDSDIPSFLSETGYVSRQEIESARIKVTQSLRKAKGEPKSEQAETEKADSGINEKYSLINIPDDMLSPEQLVEKKKQLSLKSMSDGRQRMKQKRYEEELERERKQQLEEEKRLENPELYLEQLRAKYKDLSEKVDQRKRLKTNGDHSNGNNLSGGIGRGERLSASQRERMRLLTTAAFDRGKDEDTFGAKDEDWQLYKLMSKDNDDGDEGPDEDDTELARISSKLQDLDPTFVPKPETGSSQPAEASRGRSLTKEDFQIVIGVERFRCPEILFNPNWMAVDQAGLDEMAGVSIRRLSCKDEELEKRLTSSILVTGGSSIFPGMIERLEAGIRMIRPCGSPIKVVRALDPIMDAWRGAAAYATIPQFHSQTFSRMDYFEKGEDWLRSYQLKYSL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02640 722 PANTHER ACTIN 21 710 IPR004000 -
Vian2g02640 722 MobiDBLite consensus disorder prediction 463 489 - -
Vian2g02640 722 Gene3D Actin; Chain A, domain 4 540 611 - -
Vian2g02640 722 SMART actin_3 19 718 IPR004000 -
Vian2g02640 722 MobiDBLite consensus disorder prediction 360 384 - -
Vian2g02640 722 SUPERFAMILY Actin-like ATPase domain 171 715 IPR043129 -
Vian2g02640 722 Pfam Actin 587 714 IPR004000 -
Vian2g02640 722 Pfam Actin 19 368 IPR004000 -
Vian2g02640 722 MobiDBLite consensus disorder prediction 360 380 - -
Vian2g02640 722 Coils Coil 309 329 - -
Vian2g02640 722 SUPERFAMILY Actin-like ATPase domain 19 159 IPR043129 -
Vian2g02640 722 Coils Coil 418 445 - -
Vian2g02640 722 Gene3D - 682 710 - -
Vian2g02640 722 FunFam Actin-related protein 5 203 257 - -
Vian2g02640 722 FunFam Actin-related protein 5 171 202 - -
Vian2g02640 722 FunFam Actin-related protein 5 18 170 - -
Vian2g02640 722 MobiDBLite consensus disorder prediction 406 441 - -
Vian2g02640 722 Gene3D - 18 169 - -
Vian2g02640 722 Coils Coil 449 469 - -
Vian2g02640 722 Gene3D Actin; Chain A, domain 4 203 259 - -
Vian2g02640 722 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Vian2g02640 722 Gene3D - 612 681 - -
Vian2g02640 722 MobiDBLite consensus disorder prediction 552 580 - -
Vian2g02640 722 Gene3D - 174 202 - -
Vian2g02640 722 FunFam ARP5 actin-related protein 5 homolog 612 681 - -
Vian2g02640 722 FunFam Putative actin-related protein 5 682 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02640 Vian-Chr2 47175373 47180460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02640 588 709 Miscellaneous Gene Families AT2G42100 32.787 1.91e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02640 K11672 - gmx:100808396 1290.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02640 2 47175373 47180460 Vian2g02640 2 47175373 47180460 ECH
Vian2g02640 2 47175373 47180460 Vian7g01655 7 25990024 25995584 PCT